Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M22
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 101 KFLLVPIFIVCFPCICFTLISYNTYLSI*KWNHLSLL*QRSIDFEEVIICYHKIKNSVID 280
           K+ +VP  +  F         Y  Y  I  + H   + Q+  + +E+I    KI++  +D
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVD 457

Query: 281 KL 286
           KL
Sbjct: 458 KL 459


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 101 KFLLVPIFIVCFPCICFTLISYNTYLSI*KWNHLSLL*QRSIDFEEVIICYHKIKNSVID 280
           K+ +VP  +  F         Y  Y  I  + H   + Q+  + +E+I    KI++  +D
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVD 457

Query: 281 KL 286
           KL
Sbjct: 458 KL 459


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 425 GKVLHVLNHYWSPQQLHLPVMIYFAASLES 336
           G  + +++H  S +QLH+PV +   A+L S
Sbjct: 128 GGGIELISHIIS-KQLHIPVSVLMGANLAS 156


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 309 NEMSVNLTITLKRSSKVYHDGQV*LLWRP 395
           N    N  +TL   + +YH G V   W+P
Sbjct: 119 NNADGNFEVTLATKATIYHQGLV--EWKP 145


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 307 ETKCL*I*LLLSREAAKYIMTGRCSCC 387
           E  CL + LL  RE + Y++     CC
Sbjct: 227 EYSCLKVDLLFKREFSYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 307 ETKCL*I*LLLSREAAKYIMTGRCSCC 387
           E  CL + LL  RE + Y++     CC
Sbjct: 227 EYSCLKVDLLFKREFSYYLIQIYIPCC 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,152
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)