Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M21
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   3.4  
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568     27   6.0  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     27   6.0  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    27   7.9  
04_01_0615 - 8060085-8060972                                           27   7.9  
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743...    27   7.9  

>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 232  LESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSA 387
            L+ KGSPRS +   P+  E   +E+Q+     D     L++ V+Q   PS A
Sbjct: 3519 LQDKGSPRSTQPPPPI--ESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565


>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
          Length = 156

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 251 GEPLLSKVTPSIKVISLFD-LKVSAYFKTFSLRHIYTSSSTQS--LTMPKTLPPIPRSVD 81
           G+ L  ++ P + V+ L D ++   Y    + R  Y+SSS+ S     P+  PP P  + 
Sbjct: 13  GDVLTFRLHP-LAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMS 71

Query: 80  SCSVGI 63
            C +G+
Sbjct: 72  GCVIGV 77


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 142 DVYM-CLKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVES 318
           DV++ CLKE +    ETL +  EI + DG      G   SA+     S E      + E+
Sbjct: 197 DVHLSCLKELMSHSHETLTNLYEILMEDGTPTNDCGEGASAQDNSSYSGESNGDAEEFEN 256

Query: 319 R 321
           +
Sbjct: 257 Q 257


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 146 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 63
           +S+ST S T+ +  PP PRS+ SC   I
Sbjct: 6   SSTSTPSSTIERLRPPYPRSI-SCHASI 32


>04_01_0615 - 8060085-8060972
          Length = 295

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 67  ASRAPPRLKVGQPRKPSYRSLV 2
           +S APP   +G PRKP +R+ +
Sbjct: 191 SSAAPPAWDLGGPRKPHFRAAI 212


>03_04_0053 +
           16873735-16873927,16874011-16874162,16874286-16874380,
           16874704-16874818,16875054-16875343,16875436-16875585,
           16876478-16876598,16876671-16876942,16877466-16877937
          Length = 619

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 172 LKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLE 351
           L   + LRS R++ L D V  + KG  +  +      D+P      +      +AA F++
Sbjct: 384 LNQVKVLRSMRQLRLEDVVVGQYKGHSKGGKTYPAYVDDPTVPSGSITPTFA-AAALFID 442

Query: 352 N 354
           N
Sbjct: 443 N 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,220,773
Number of Sequences: 37544
Number of extensions: 271539
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)