Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M20
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     26   0.30 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.69 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   0.91 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   3.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.5  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 534 QNLKAAYDDFVKHAEEV 584
           +N +AAY+D VKH E +
Sbjct: 164 ENCRAAYEDIVKHLERL 180


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 343 APTSSPELGAHSRGSPQGAPRRRETSHRITREAA 444
           AP   P    H R +    PR     H +TR AA
Sbjct: 313 APRERPRATDHQRRNEPKRPRPNIDRHEVTRPAA 346


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +1

Query: 340 SAPTSSPELGAHSRGSPQGAPRRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDL 519
           S  T+SP     S+ SP  APR   T   I   + +  P     + E  +    +   ++
Sbjct: 195 SRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQMQSYRPTGNI 254

Query: 520 TETGAKT 540
           T  G+ T
Sbjct: 255 TPHGSNT 261


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 EAANRHPEHTKGEPEPGEGSRRQHGSDLTE 525
           + A ++P+H    P PG G +   G D T+
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMG-DYTQ 75


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 452 IQNTLKESQNLAKEVGVNMDQTSQKLAPKLESGI 553
           +   L  + +    V  N+ +T QK+AP+L+  +
Sbjct: 524 LPTVLSMANDKVANVRFNVAKTLQKIAPQLDQAV 557


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 258 PTPWCSRSPSYPT 296
           PTP CS + S PT
Sbjct: 192 PTPTCSEASSSPT 204


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 448 RHPEHTKGEPEPGEGSRRQHGSDLTE 525
           ++P+H    P PG G +   G D T+
Sbjct: 7   QYPQHPYAAPAPGHGLQPTMG-DYTQ 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,280
Number of Sequences: 336
Number of extensions: 2593
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)