Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M19
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   6.0  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    27   6.0  
Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U40060-8|AAA81146.1|  218|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
            protein T05C12.10 protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 34   GIFYSRFQHLSQRVFHSMIIVFIYIHNSIFNLL 132
            G+  S F HL     H +I  FIY   + F LL
Sbjct: 1109 GVLSSCFSHLESHSAHKLIFDFIYYVYNAFGLL 1141


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
            protein T05C12.10 protein.
          Length = 1169

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 34   GIFYSRFQHLSQRVFHSMIIVFIYIHNSIFNLL 132
            G+  S F HL     H +I  FIY   + F LL
Sbjct: 1109 GVLSSCFSHLESHSAHKLIFDFIYYVYNAFGLL 1141


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 7/32 (21%), Positives = 22/32 (68%)
 Frame = +2

Query: 95  FLFIYTIAFLIYFFLLPTHTFHEGLQYFFYNN 190
           F+F++++ +L+  +++   TF++ L+++   N
Sbjct: 182 FIFLFSVGYLVLLYVINLLTFYQILKFYLRKN 213


>Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical
           protein T07C12.1 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 351 LMIYLITTRKTHNRHNINFLLLFY 280
           + +YLI T K++   N  FLLLF+
Sbjct: 24  IFLYLIFTEKSNRYGNYRFLLLFF 47


>U40060-8|AAA81146.1|  218|Caenorhabditis elegans Hypothetical
           protein F38B6.2 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 227 ITVFIAIYILISGYCKKNI 171
           I +FI+++I+ SGYC+ +I
Sbjct: 4   ILIFISVFIIESGYCQPSI 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,955,415
Number of Sequences: 27780
Number of extensions: 157010
Number of successful extensions: 365
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)