Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M18
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 142 3e-35
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 138 5e-34
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 28 1.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.7
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.1
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 6.7
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 6.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.8
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 142 bits (345), Expect = 3e-35
Identities = 67/131 (51%), Positives = 92/131 (70%)
Frame = +2
Query: 212 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 391
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 392 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 571
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE T++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 572 RRVKMAPGVTV 604
R +K PGVTV
Sbjct: 122 RVIKCLPGVTV 132
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 138 bits (335), Expect = 5e-34
Identities = 65/131 (49%), Positives = 91/131 (69%)
Frame = +2
Query: 212 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 391
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 392 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 571
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE T++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 572 RRVKMAPGVTV 604
R +K PGVTV
Sbjct: 122 RVIKCLPGVTV 132
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 172 PMMFDNYFTVSFIKTKYALFQLYQVIIHHNFVYIIDNML 56
P++F + T+ +KT+Y ++ + + NF Y +D L
Sbjct: 32 PLIFYSNTTMKKLKTEYPIYHRHLSALKRNFYYTMDAQL 70
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/90 (21%), Positives = 44/90 (48%)
Frame = +2
Query: 272 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 451
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 452 VTKGFQYKMRAVYAHFPINCVTTEGNTIIE 541
++K + + CV T TI++
Sbjct: 1170 LSKIPTNLLDLPMFQVYLGCVDTLIQTIVK 1199
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 68 NNIYKIVMNYNLI*LK*CIFSLNKRNSKI 154
N+ Y++++ NL+ L C+F NK SKI
Sbjct: 886 NDDYQVLVCENLVGLFSCVFVKNKLQSKI 914
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 418 SMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCHH--*GKHNY 537
S L+CR+ +CD G P + C RS Q C + GK NY
Sbjct: 22 SCLACRRKKLKCDHGRPCSN-CLKRS-TIQSCIYIDPGKTNY 61
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 405 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 316
+SS PNH ++ RGLT ST K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 307 NSARTFHCHQTRFHMDGETLRNLH 236
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,508
Number of Sequences: 5004
Number of extensions: 47952
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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