Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M17
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    30   0.26 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.78 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   4.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.2  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.2  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   5.5  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    25   9.6  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 1   ARGPEDKNQNSSGNSSTNADKSSSKDGNPSNFIPTTVV 114
           A GP  + Q SSG+S+ +  KSS+ + N S+   T  V
Sbjct: 134 ATGPSRRRQVSSGSSTPSMTKSSANNNNVSSTANTAAV 171


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 22  NQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSS 123
           + +SS +SS+++  SSS   + S+ +P T  TSS
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSS 216



 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 22  NQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSSH 126
           + +SS +SS+++  SSS   + S+   T+  +SSH
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSH 218



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/102 (16%), Positives = 27/102 (26%)
 Frame = +1

Query: 28  NSSGNSSTNADKSSSKDGNPSNFIPTTVVTSSHIXXXXXXXXXXXXXXXXXXXXXXXXXX 207
           +SS  SST +  SSS   + S    T+  +SS                            
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 187

Query: 208 XXXXXEAWXXXXXXXXXXXXARKQSSPKPQYSTVKSQENGTS 333
                 +                 SS    +S+  S  + +S
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSS 229


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/104 (15%), Positives = 32/104 (30%)
 Frame = +1

Query: 22  NQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSSHIXXXXXXXXXXXXXXXXXXXXXXXX 201
           +  SS  SS+++  ++S   + S+ I ++  +SS                          
Sbjct: 248 SSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI 307

Query: 202 XXXXXXXEAWXXXXXXXXXXXXARKQSSPKPQYSTVKSQENGTS 333
                   ++            +   SSP    ST+ S  +  S
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351



 Score = 24.6 bits (51), Expect = 9.6
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 2/104 (1%)
 Frame = +1

Query: 28  NSSGNSSTNADKSSSKDGNPSNFIPTTVV--TSSHIXXXXXXXXXXXXXXXXXXXXXXXX 201
           +SS  SS+++  SSS     S+ + T+ +  TSS                          
Sbjct: 212 SSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271

Query: 202 XXXXXXXEAWXXXXXXXXXXXXARKQSSPKPQYSTVKSQENGTS 333
                   +             +   SSP    ST+ S  + +S
Sbjct: 272 IISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS 315


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +2

Query: 221 KRRGLVSVLHHPQIVQPENSPVLNHNILRLNHKKTAHQNLPVPHNNSNRIHN 376
           K+  +  +L   +I  P     ++H +  L++KKT    L    ++S ++HN
Sbjct: 54  KQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKSQLDRFLSSSKKLHN 105


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +2

Query: 248 HHPQIVQPENSPVLNHNILRLNHKKTAHQN--------LPVPHNNSNRIHNRLKRE 391
           HH + ++P     + HN+ + +HK   H+          PVPHN +   H   K E
Sbjct: 371 HHGKFLRP-----VPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 421


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 16  DKNQNSSGNSSTNADKSSSKDGNPSN 93
           ++N N   N  T++DKS S+D  PSN
Sbjct: 53  EENLNDEANH-TSSDKSKSEDYQPSN 77


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 22  NQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSSH 126
           + +SS +SS+ +  SSSK  + S+   T+  T+SH
Sbjct: 150 SSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSH 184


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 25  QNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSS 123
           Q++S N +   D+S S DGN    + +T+   S
Sbjct: 331 QSTSDNHTVTVDRSLSNDGNHWGSLSSTIYNPS 363


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 13  EDKNQNSSGNSSTNADKSSSKDGNPSNFIPTT 108
           EDK +    +S  N  KSSS     SNF  T+
Sbjct: 111 EDKKEEDESSSYKNEFKSSSSASVSSNFEKTS 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.126    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,824
Number of Sequences: 5004
Number of extensions: 23665
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)