Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M17
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0030 + 290232-291020                                             29   2.4  
06_01_0743 - 5534743-5534985,5535075-5535172,5535286-5535429,553...    28   5.6  
04_03_0940 - 20943986-20944216,20944301-20944500,20944506-20944791     27   7.4  
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048...    27   7.4  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    27   9.8  
01_06_1792 - 39912714-39913559                                         27   9.8  

>03_01_0030 + 290232-291020
          Length = 262

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 254 PQIVQPENSPVLNHNILRLNHKKTAHQNLPVPHNNSN-RIHNRLKR 388
           P++  P + P L   +LRL+ +  AH  +P+P   S+ R + R +R
Sbjct: 92  PELPHPRDGPALP--LLRLHRRTIAHHRIPLPPERSHARDYPRQRR 135


>06_01_0743 -
           5534743-5534985,5535075-5535172,5535286-5535429,
           5535594-5535643,5535733-5535787,5536595-5536686,
           5536758-5536806,5536883-5537079,5537160-5537302,
           5537625-5537777,5537848-5537896,5537974-5538071,
           5538172-5538327,5538434-5538791,5538873-5538943,
           5539134-5539217,5539307-5539468,5539534-5539677,
           5539769-5540004,5540990-5541374
          Length = 988

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 315 TRKRHIRIFQSHTTTPIEFTTG 380
           T K HIR+F  H     E TTG
Sbjct: 528 TTKEHIRVFADHVVESSEITTG 549


>04_03_0940 - 20943986-20944216,20944301-20944500,20944506-20944791
          Length = 238

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 318 RKRHIRIFQSHTTTPIEFTTGSNEKQQRH 404
           R+R ++  +  TTT    TTG+NEK  R+
Sbjct: 76  RRRRVQQVRHRTTTTAATTTGANEKYGRN 104


>02_05_0897 +
           32603060-32603387,32604348-32604589,32604681-32604824,
           32604889-32605050,32605129-32605212,32605528-32605601,
           32605850-32606039,32606120-32606275,32606368-32606465,
           32606976-32607102,32607193-32607292,32607402-32607572,
           32607790-32607838,32607912-32608003,32608705-32608774,
           32608999-32609023,32609059-32609293,32609425-32609525,
           32609614-32609865
          Length = 899

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 315 TRKRHIRIFQSHTTTPIEFTTG 380
           T K HIR+F  H     E TTG
Sbjct: 456 TTKEHIRVFADHVVESSEVTTG 477


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 7    GPEDKNQNSSGNSSTNADKSSSKDGNPSNFIPTTVVT 117
            G ED++  +S     + D+   +DGN    + T V T
Sbjct: 1560 GEEDEDDGTSDGELVSIDRDEEEDGNSERALATKVCT 1596


>01_06_1792 - 39912714-39913559
          Length = 281

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 4   RGPEDKNQNSSGNSST-NADKSSSKDGNPSNF 96
           R    K+ +  GNSS  N D      GNP+N+
Sbjct: 82  RNNHSKDSHGGGNSSNYNKDSYGGNSGNPNNY 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.126    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,121,313
Number of Sequences: 37544
Number of extensions: 142952
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)