Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M17
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-3|AAC24395.2|  337|Caenorhabditis elegans Serpentine rece...    31   0.41 
AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical ...    28   3.8  
AL132858-3|CAB60478.2|  391|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain p...    28   3.8  
AF381628-1|AAL12001.1|  372|Caenorhabditis elegans homeodomain p...    27   6.7  
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U61946-3|AAC24395.2|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein222 protein.
          Length = 337

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 158 SFLDLEFTTFICDDVTTVVGIKFDGLPSFELL----LSAFVLELPELFWFL 18
           S L LE TTF+ D + +V+      +P   +L    L+ F L LPE+FW L
Sbjct: 58  SLLYLETTTFLLDLMLSVICTVNAFIPLMAVLPIGILTKFGLRLPEVFWIL 108


>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 7   GPEDKNQNSSGNSSTNADKSSSKDGNPSN 93
           G    N NSSGNS+  ++ S S +GN ++
Sbjct: 207 GNSSNNNNSSGNSNYGSNNSGSGNGNSNS 235


>AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6b protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  KNQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSS 123
           ++QN SG+ S     + S   N  NFIPT  +T +
Sbjct: 18  QSQNLSGSGSGTGGNTGSTTMNSGNFIPTPSLTGT 52


>AL132858-3|CAB60478.2|  391|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6a protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  KNQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSS 123
           ++QN SG+ S     + S   N  NFIPT  +T +
Sbjct: 18  QSQNLSGSGSGTGGNTGSTTMNSGNFIPTPSLTGT 52


>AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  KNQNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSS 123
           ++QN SG+ S     + S   N  NFIPT  +T +
Sbjct: 12  QSQNLSGSGSGTGGNTGSTTMNSGNFIPTPSLTGT 46


>AF381628-1|AAL12001.1|  372|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 25  QNSSGNSSTNADKSSSKDGNPSNFIPTTVVTSS 123
           QN SG+ S     + S   N  NFIPT  +T +
Sbjct: 1   QNLSGSGSGTGGNTGSTTMNSGNFIPTPSLTGT 33


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 248 HHPQIVQPENSPVLNHNILRLNHKKTAHQNLPVPHNNSNRIHN 376
           H+ QIVQ + S V +H       K+   Q+ P   NN+N  +N
Sbjct: 354 HNVQIVQNKISSVPSHLPTSNGGKENLRQSTPDEQNNNNNNNN 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.126    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,913,032
Number of Sequences: 27780
Number of extensions: 135149
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)