Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M17
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    27   0.12 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    27   0.12 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.12 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   RGPEDKNQNSSGN-SSTNADKSSSKDGNPSNFIPTTVVTS 120
           +G  D      GN   TN++++  KDG+  + I  TVV+S
Sbjct: 289 KGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSS 328


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   RGPEDKNQNSSGN-SSTNADKSSSKDGNPSNFIPTTVVTS 120
           +G  D      GN   TN++++  KDG+  + I  TVV+S
Sbjct: 204 KGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSS 243


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   RGPEDKNQNSSGN-SSTNADKSSSKDGNPSNFIPTTVVTS 120
           +G  D      GN   TN++++  KDG+  + I  TVV+S
Sbjct: 523 KGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSS 562


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 31  SSGNSSTNADKSSSKDGNPSN 93
           ++GN++TNA  +++ + N +N
Sbjct: 229 TAGNANTNASNNNNNNNNNNN 249


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 79  HLLNCFYLHSY*NYLNYFGFCPPALV 2
           H   C+  H   + + YFG+ P  +V
Sbjct: 314 HNATCYLSHVDPDVVQYFGYLPQDMV 339


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein
          protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 79 HLLNCFYLHSY*NYLNYFGFCPPALV 2
          H   C+  H   + + YFG+ P  +V
Sbjct: 20 HNATCYLSHVDPDVVQYFGYLPQDMV 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 10  PEDKNQNSSGNSSTNADKSSSKDGN 84
           P   N NS  + S N+D S + D N
Sbjct: 216 PRLTNSNSIKHESDNSDYSHTTDEN 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.126    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,904
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)