Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M16
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 47 1e-06
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 44 8e-06
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 29 0.41
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 3.9
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 5.1
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 6.7
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 6.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.9
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 24 8.9
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 24 8.9
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 46.8 bits (106), Expect = 1e-06
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1
Query: 10 AREVLRLRGVLSRDQRWDVVVDLFFYRD 93
AREVLR+RG LSR WDV+ DL+FYRD
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRD 208
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 10 AREVLRLRGVLSRDQRWDVVVDLFFYRD 93
AREVLRLRG +SR W+V+ DL+FYRD
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRD 209
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 28.7 bits (61), Expect = 0.41
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -1
Query: 235 PVLHLQPMMQLVQHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPN 56
PV+ L P+ +L +H+++ + + AL ++ Q LV SH+ Q + + + +H N
Sbjct: 184 PVVPLLPLEELEEHNKTSQNRMEEALNYLKQLQKNEPLVHERSHTFQQTNPQNNFHRHTN 243
Query: 55 A 53
+
Sbjct: 244 S 244
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 62 MLSLTCSSIVTLKRVRRKSNKLRNRLSS---LPKWKRRRQFMRNGLRMLNQLHHGL 220
ML + + +++ ++R++ ++ +L LP W ++ R G MLN+L L
Sbjct: 1 MLGIRKNIRISVNFLQRRTITVKQKLGKNRPLPGWDPNSEYFRPGPTMLNRLQEHL 56
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 5.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 118 ALPSHSLQGHDRRTSQRQHPNAGH 47
A+ SHS + H +RT+Q+ H
Sbjct: 546 AISSHSSESHSKRTTQQPKSTPNH 569
>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 141
Score = 24.6 bits (51), Expect = 6.7
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = +2
Query: 35 VFLVVTSVGM--LSLTCSSI--VTLKRVRRK--SNKLRNRLSSLPKWKRRRQFMRNGLRM 196
V+L+ + G L LT +SI V+L+ R + +N L R SSL + RNG ++
Sbjct: 16 VYLISVNCGARELWLTITSIHFVSLREQRYEFLANSLGERTSSLKSQEEMVSVSRNGKQL 75
Query: 197 LNQ 205
L++
Sbjct: 76 LSE 78
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 65 LSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLNQL 208
L + S+ +KRV + LR R P+ +R F +G+R++ +L
Sbjct: 365 LEQSLSACAIMKRVYFRHFNLRERWLHAPEKIKRCSFPIHGVRLITKL 412
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.2 bits (50), Expect = 8.9
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -2
Query: 402 KRRYITFTRRSSLGQNLPMTEQRQGQARYSAPFVLNLTGPVFLC-WGCTKCSRSSGCRCC 226
KR Y TF L + + + G+ R+ A FV P C CT C+R CR
Sbjct: 1378 KRSYTTFGVLKDL-RCRKVIAKLVGKVRWRAGFV-----PERHCDEDCTVCNRKKACRLW 1431
Query: 225 IFSP 214
F P
Sbjct: 1432 NFKP 1435
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 24.2 bits (50), Expect = 8.9
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Frame = -2
Query: 222 FSP*CNWFNILNPFLMNWRRRFHFGXXXXXXXXXXXXXXXXFR---VTIEEQVNDNIPTL 52
FS N +I +L+ W + + R + IE +ND + TL
Sbjct: 143 FSYPANQVSITESYLLRWTKGLNIPEAINKDFAQFLTEGFKARNLPIRIEAVINDTVGTL 202
Query: 51 VTTKNTT-ESQYF 16
VT T+ ES F
Sbjct: 203 VTRAYTSKESDTF 215
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 24.2 bits (50), Expect = 8.9
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = -2
Query: 87 IEEQVNDNIPTLVTTKNTTESQYFTCSS 4
++ +N N+P+ + +N++ +QY+ +S
Sbjct: 246 LKVNMNSNVPSSDSVRNSSPNQYYASTS 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,419
Number of Sequences: 5004
Number of extensions: 23786
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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