Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M16
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    42   2e-04
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    42   2e-04
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    32   0.18 
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    29   1.6  
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216...    28   3.8  
04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555     28   3.8  
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937...    27   5.0  
01_02_0081 + 10943368-10943787                                         27   8.7  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 10  AREVLRLRGVLSRDQRWDVVVDLFFYRD 93
           AR VL++RG +    +WDV+VDLFFYRD
Sbjct: 183 ARMVLQMRGTILPGHKWDVMVDLFFYRD 210


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 10  AREVLRLRGVLSRDQRWDVVVDLFFYRD 93
           AR VL++RG +    +WDV+VDLFFYRD
Sbjct: 183 ARMVLQMRGTILPGHKWDVMVDLFFYRD 210


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 56  VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLNQLHHGLK 223
           VGM+  T S +  LK +    NKL   +  L  W    Q++R  +  + Q+  GL+
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLRLNICNVGQIVRGLR 159


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -1

Query: 199 QHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPNAGHD*EHHGVS 23
           QH Q  P     ALP        P  ++  + S   H    SQ Q P + H   HH  S
Sbjct: 120 QHQQQTPQAALQALPPPNSTASSPIPISSIAPSSPRHPHHHSQPQQPQSHHHHHHHSGS 178


>12_02_0364 -
           18020249-18020737,18021075-18021502,18021563-18021649,
           18022059-18022192,18023051-18023053,18023129-18023187,
           18023429-18023887
          Length = 552

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 354 LPMTEQRQGQARYSAPFVLN 295
           LP+TE R G ARY+A   LN
Sbjct: 77  LPITESRSGNARYAAFHTLN 96


>04_04_0301 + 24251287-24251425,24252180-24252249,24252610-24253555
          Length = 384

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 275 KKTGPVRFKTNGAL*RACPCRCSVMGRFCPRLDRRVNVIYL 397
           ++T P+R     A   ACP      GR    LDR VN I++
Sbjct: 25  RRTPPLRVAGRAAAAAACPAASDKRGRRQISLDRTVNGIFV 65


>05_05_0087 -
           22291732-22292029,22292967-22293034,22293640-22293723,
           22295967-22296010,22296210-22296300,22296452-22296634,
           22297594-22297637,22298122-22298355,22298452-22298712,
           22298790-22298915,22298993-22299077,22299171-22299244,
           22299988-22300186
          Length = 596

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 324 ARYSAPFVLNLTGPVFLCWGCTKCSRSSGCRCCI 223
           AR+SA  V+   G VF CWG  K  +S  C C I
Sbjct: 425 ARHSA--VITDKGDVF-CWGWNKYGQSVSCICYI 455


>01_02_0081 + 10943368-10943787
          Length = 139

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
 Frame = -2

Query: 267 GCTKCSRSSGC-RCCIFSP*C-----NWFNILNPF-LMNW 169
           GC  C R  GC  C  + P C     +W  I+ P  L NW
Sbjct: 82  GCDGCGRGGGCDGCGRYPPMCEDEPSSWVRIVAPLDLANW 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,216,531
Number of Sequences: 37544
Number of extensions: 186974
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)