Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M15
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...   156   2e-39
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    26   3.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    26   3.9  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   6.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   6.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.0  

>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score =  156 bits (379), Expect = 2e-39
 Identities = 72/156 (46%), Positives = 109/156 (69%), Gaps = 3/156 (1%)
 Frame = +1

Query: 64  LKMQLSEVDNVKIYNLS---FGKSLPDWLTERKKHALLKKNVDLRRRIELIQEFDMPGVS 234
           + +++   +NV++Y +S     + LP+W+++RK    LKK+  L  RIEL+Q+F+ P  S
Sbjct: 1   MSLKVQNPNNVRVYTVSGEGVTQRLPNWISKRK----LKKDYALSHRIELLQDFEYPEAS 56

Query: 235 TNIRVSKDGQYIMATGIYKPRLKCFDVNNLSLKFERCLDSEVVKFEILSEDYSKIVFLQC 414
             I+ ++DG+Y MATG+YKP +K FD   +SLKFER  D+E V+FEILS+D++K V LQ 
Sbjct: 57  NRIKCTRDGKYAMATGVYKPHIKVFDFAEMSLKFERHTDAENVQFEILSDDWTKSVHLQT 116

Query: 415 DRYVEFHVGHGRHYRLRVPRFGRDIAYHQSSCDLFV 522
           DR V+FH   G HY  R+P++GRD+ YH  +CDL++
Sbjct: 117 DRTVDFHSQGGIHYSTRIPKYGRDLKYHYPNCDLYL 152


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 137 QSGNDFPKLKLYILTLSTSDNCI 69
           ++GND PKL   +  LS SD C+
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPCV 518


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 137 QSGNDFPKLKLYILTLSTSDNCI 69
           ++GND PKL   +  LS SD C+
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPCV 518


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 338 SNFNDKLLTSKHFN 297
           SNF D+L+TSKH N
Sbjct: 30  SNFIDELITSKHAN 43


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 143 VNQSGNDFPKLKLYILTLSTSDNCIFKY*SYI-SFIYTLH 27
           +  SG D   +K  + +LSTS+  + KY + + S +  LH
Sbjct: 95  IQASGRDLQNMKQQLNSLSTSERFLTKYHNLVRSCMQVLH 134


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 421 YVEFHVGHGRHYRLRVPRFGRDIAYHQSSCDLFV 522
           +++FH+    +    +P+F ++I  H    + FV
Sbjct: 706 HLDFHIAGESYAGHYIPQFAKEIMEHNQGANFFV 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,832
Number of Sequences: 5004
Number of extensions: 41103
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)