Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M15
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150...   106   9e-24
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    33   0.18 
02_05_0734 + 31318380-31318610,31319422-31319988                       30   1.3  
07_01_0499 - 3738959-3740068                                           29   1.7  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   1.7  
08_02_0265 - 15012662-15013918                                         27   6.9  
01_04_0065 + 15627559-15627987,15630933-15631176,15632198-15632703     27   6.9  

>06_01_0194 +
           1503350-1503554,1504399-1504490,1504835-1504935,
           1506186-1506276,1506616-1506674,1506764-1506884,
           1506959-1507027,1507321-1507373,1507688-1507796,
           1507895-1508065,1508148-1508306,1508561-1508650,
           1508751-1508933,1509837-1510027,1510340-1510787
          Length = 713

 Score =  106 bits (255), Expect = 9e-24
 Identities = 56/149 (37%), Positives = 91/149 (61%)
 Frame = +1

Query: 70  MQLSEVDNVKIYNLSFGKSLPDWLTERKKHALLKKNVDLRRRIELIQEFDMPGVSTNIRV 249
           ++ + ++ VK+Y+++  + +  W+  +KK AL +K+  +  R+ LI      G    +++
Sbjct: 10  LRSTSINGVKLYSITGNRYVAPWVLSKKKRAL-RKDAGILTRLTLICSLYF-GFFFLVQM 67

Query: 250 SKDGQYIMATGIYKPRLKCFDVNNLSLKFERCLDSEVVKFEILSEDYSKIVFLQCDRYVE 429
                    T IY P++K +++  LS+KFER + SE+V F++L +DYSK+ FL  DR V 
Sbjct: 68  ---------TCIYPPQVKVYELKELSMKFERHMISEIVDFQVLGDDYSKLAFLCADRSVC 118

Query: 430 FHVGHGRHYRLRVPRFGRDIAYHQSSCDL 516
            H  +GRHY LR+PR GRD+AY   SCDL
Sbjct: 119 LHAKYGRHYSLRIPRMGRDMAYDCWSCDL 147


>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = +1

Query: 70  MQLSEVDNVKIYNLSFGKSLPDWLTERKKHALLKKNVDLRRRIELIQEFDMPGVSTNIR 246
           +QLS +D +  Y LS GKS P  +T   ++ +L  ++D      L+ E+     STN+R
Sbjct: 523 LQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLD--DAANLLSEYSTWLSSTNVR 579


>02_05_0734 + 31318380-31318610,31319422-31319988
          Length = 265

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -2

Query: 344 HLSNFNDKLLTSKHFNLGL*IPVAIIYCPSFETLILVLTPGISNSCMSSILLRKSTFFFN 165
           H++ F  K + SKH  L +      +Y    E LIL    G  +  +S +  R S FFF+
Sbjct: 118 HINKFLYKHIHSKHHTLVVPYSFGALYNHPLEGLILDTIGGALSFLVSGMTPRTSIFFFS 177

Query: 164 RA 159
            A
Sbjct: 178 FA 179


>07_01_0499 - 3738959-3740068
          Length = 369

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 139 LTERKKHALLKKNVDLRRRIEL-IQEFDMPGVSTNIRVSKDGQYI 270
           LT ++K+ALLKKNVD    ++L +  FD  G   ++      +Y+
Sbjct: 139 LTRKQKYALLKKNVDELHLVQLGLTLFDAGGRLPDLGTGGAARYV 183


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 226 GVSTNIRVSKDGQYIMATGIYKPRLKCFDVNN 321
           G  T +  SKDG Y+   G   P + C+D+ N
Sbjct: 276 GGVTQVLFSKDGNYLYTGGRKDPYILCWDIRN 307


>08_02_0265 - 15012662-15013918
          Length = 418

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 CGISCGSWPTLSPKSTSFWQRYSIPPEFL*PF 518
           CG S G+W  L+PK   +  R+ + P  L PF
Sbjct: 85  CG-SLGNWIALTPKRRRWRPRHQVRPLLLNPF 115


>01_04_0065 + 15627559-15627987,15630933-15631176,15632198-15632703
          Length = 392

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 94  HCLLLIIAFLSIKAIFHSFTHCI 26
           H LLL+ AFL IKA   + T C+
Sbjct: 184 HLLLLVAAFLDIKADVPALTACV 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,478,796
Number of Sequences: 37544
Number of extensions: 223269
Number of successful extensions: 563
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)