Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M15
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41992-8|AAA83359.1|  754|Caenorhabditis elegans Hypothetical pr...   180   4e-46
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    31   0.38 
U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...    31   0.66 
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...    31   0.66 
U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016665-1|AAC71185.1|  143|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U41992-8|AAA83359.1|  754|Caenorhabditis elegans Hypothetical
           protein F32E10.1 protein.
          Length = 754

 Score =  180 bits (439), Expect = 4e-46
 Identities = 78/151 (51%), Positives = 119/151 (78%)
 Frame = +1

Query: 70  MQLSEVDNVKIYNLSFGKSLPDWLTERKKHALLKKNVDLRRRIELIQEFDMPGVSTNIRV 249
           M++S V++VKIYNLS GKSLP+W++ R +  L ++N D+R+RI+LIQ+F+MP VS  + +
Sbjct: 1   MEVSTVNDVKIYNLSAGKSLPEWMSSRTRRKLEQRNTDVRQRIQLIQDFEMPDVSNTVNI 60

Query: 250 SKDGQYIMATGIYKPRLKCFDVNNLSLKFERCLDSEVVKFEILSEDYSKIVFLQCDRYVE 429
           + DG+Y+ A+G YKP L+C+D+NNLSLKFER LD++V+K   LS+DYSK+V L+ +R++E
Sbjct: 61  TPDGKYVWASGNYKPWLRCYDLNNLSLKFERGLDADVIKLIPLSDDYSKVVILEEERWIE 120

Query: 430 FHVGHGRHYRLRVPRFGRDIAYHQSSCDLFV 522
            H   GR++R+R+P  GRD+A  + S DL++
Sbjct: 121 MHAMLGRYFRMRMPCQGRDMALSEESSDLYL 151


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
 Frame = -3

Query: 307 NILILVCKYPLPLYTVXXXXXXXXXXXLAYQTLV*VLFSFANPHFFLTEH--VFFVLLTN 134
           N+  ++C  P+P+Y V            +Y+      F F   +  LT+   +FF   T 
Sbjct: 25  NLQFIICTLPVPIYFVVVAIWTINGASNSYR------FPFLQTYMILTDRFWLFFRCFTI 78

Query: 133 LVMIFQNLSYIF*HCLLLIIAFLSIKAIFH--SFTHCIYYNMITLV 2
           +       +YIF  CL+  I ++   ++    +F   I+Y M  L+
Sbjct: 79  VAWCGWCSNYIFFPCLMNAILYIISLSLSRDTTFILFIFYQMNKLI 124


>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 85  VDNVKIYNLSFGKSLPDWLTERKKHALLKKNV-DLRRRI-ELIQEFDMPGVST 237
           V   K YN   GK+L D+ +  + +   KK+V DL +R+ E   +F++PG  T
Sbjct: 431 VQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNET 483


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 85  VDNVKIYNLSFGKSLPDWLTERKKHALLKKNV-DLRRRI-ELIQEFDMPGVST 237
           V   K YN   GK+L D+ +  + +   KK+V DL +R+ E   +F++PG  T
Sbjct: 454 VQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNET 506


>U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical
           protein ZK742.2 protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 67  KMQLSEVDNVKIYNLSFGKSLPDWLTERKKHALLKKNVDLRR 192
           K+++     VKI  + FG  L  W  ERK   + K N D  R
Sbjct: 391 KIEMKNEKPVKIKTVPFGLDLKYWGEERKDVEVPKNNADCHR 432


>AF016665-1|AAC71185.1|  143|Caenorhabditis elegans Hypothetical
           protein C49D10.7 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 243 DISTHTWHIKLLYEFYSPSQIHI 175
           DI THTW + +  +FY    IHI
Sbjct: 117 DIFTHTWSLSVEIQFYLLHSIHI 139


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +1

Query: 100 IYNLSFGKSLPDWLTERKKHALLKKNVDLRRRIELIQEFDMPGVSTNIRVSKDGQYIMAT 279
           I++L       +W  +R  H  L K       +E  Q  +MP + T++ +S D +++   
Sbjct: 340 IFHLHMNTLTKEWAADRVAHVPLLK-------VENWQSDEMPALLTDMIISMDDRWLYVC 392

Query: 280 GIYKPRLKCFDVNN 321
           G     L  FD+ +
Sbjct: 393 GFLHGVLWRFDIQD 406


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 316  NNLSLKFERCLDSEVVKFEILSEDYSKIVFL 408
            N+  +    C+D  +++F   S +YSK+ F+
Sbjct: 922  NDTDVSISNCIDQALIEFVNYSSEYSKLKFV 952


>Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical
           protein C38D4.4 protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 281 PVAIIYCPSFETLILVLTPGISNSCMSSIL 192
           PV ++   S    + VL PGI + CM SI+
Sbjct: 209 PVTVVQRLSSTVAVPVLQPGIDSKCMPSIV 238


>AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical
           protein C49D10.8 protein.
          Length = 662

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 270 YILSIF*DSDISTHTWHIKLLYEFY 196
           Y   +F   DI THTW + L  +FY
Sbjct: 127 YFQMLFSAVDIFTHTWSLSLEIQFY 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,692
Number of Sequences: 27780
Number of extensions: 227192
Number of successful extensions: 643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)