Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M14
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 31 0.21
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 30 0.28
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.28
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.1
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 28 1.5
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 3.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 4.5
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 4.5
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 7.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.8
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.8
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 443 SVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSASAGA 327
S GFGS G G+F S+ T ++ F +SG VS++A A
Sbjct: 137 STGFGSQGTGGGLFGSSTTPATTNAFGTSG-FVSSNANA 174
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 30.3 bits (65), Expect = 0.28
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +1
Query: 400 EKTPEPKSAEPKPTDVPAXXXXXXXXXXXXXXXXVPSKSKDTPAKVNEVPTEVSEKSASP 579
+K P PK+ + P PS SKDT V + K+ +P
Sbjct: 127 KKKPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRGVRK------SKAGAP 180
Query: 580 DKPIDVGSATKPDAPV-THDGPSEHVTSK 663
P V + + + P T D PS +++K
Sbjct: 181 SDPSSVHAPSSLEKPAGTGDLPSSEISTK 209
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 30.3 bits (65), Expect = 0.28
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Frame = +1
Query: 364 TKPKPDDKVKADEKTPEPKSAEPKPTD-VPAXXXXXXXXXXXXXXXXVPSKSKDTPA-KV 537
TK ++ A+++ +P EP T A S +P K
Sbjct: 29 TKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITSEADTEKYNSSKSPVNKE 88
Query: 538 NEVPTEVSEKSASPDKPIDVGSATKPDAPVTHD-GPSEHVTSKTVKKVDSSGAA 696
V + SEKS++ +KP + +KP A + + S+H +T ++ AA
Sbjct: 89 GSVEKKSSEKSSTNNKPWRGDNTSKPSANSSAERTSSQHQKPETSSQIGKDNAA 142
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 351 FGLSFCWCFFTFGLRYFFFSFWSRIGFLFLFRNGMLCFSGFCVSYRSRLSNQFLF 187
F SF + FF + +FS + + FLF F + F F S LS LF
Sbjct: 129 FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILF 183
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 359 KRQNQNQMIKSKQMKRHLNLNLQNQSLPTFLLNLNQKRSPRIV 487
K N + K+ +RH ++ PT + NLN R+P+IV
Sbjct: 470 KESLSNDQLSVKEKRRH------HKKAPTLIQNLNSPRTPKIV 506
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 364 TKPKPDDKVKADEKTPEPKSAEPKPTD 444
+K DD++K D+KT E K A P D
Sbjct: 835 SKGSNDDEMKIDKKTTEEKEATPMEMD 861
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -2
Query: 446 TSVGFGSADLGSGVFSSALTLSSGFGFVSSGCLVSAS 336
+S GF S+ +G SS+ +L+S G VSS LVS+S
Sbjct: 3517 SSGGFSSSAFSTG--SSSFSLTSENGSVSSSSLVSSS 3551
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 82 ITSNPTSQDLNFTMKVLLFCMAFAAVTIAKPVADEKQELVAQPTSVADTKTTETQ 246
IT TS+D N + +FC+ F A+P + + +V P +T +++Q
Sbjct: 345 ITFETTSKDGNLLNAIRIFCLYFDLDYYARPNGEVLKLVVTHPNK-KNTSVSQSQ 398
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 523 TPAKVNEVPTEVSEKSASPDKPIDVGS 603
+P ++NE P P KPID GS
Sbjct: 92 SPLRLNEAPRRRGRPRKYPPKPIDEGS 118
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/46 (23%), Positives = 19/46 (41%)
Frame = +1
Query: 505 PSKSKDTPAKVNEVPTEVSEKSASPDKPIDVGSATKPDAPVTHDGP 642
P+ P K E P+ +S S + + + + PD T + P
Sbjct: 90 PNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAP 135
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 502 VPSKSKDTPAKVNEVPTEVSEKSASPDKPIDVGSATKPDAPVTHDGPSEHVTSK-TVKKV 678
+P SK V P V + S + P+A T PS+ ++S TV+ V
Sbjct: 559 LPKNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKKGNVPNAIETDSSPSDTISSSPTVRAV 618
Query: 679 DSS 687
+ S
Sbjct: 619 NLS 621
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/100 (17%), Positives = 32/100 (32%)
Frame = +1
Query: 394 ADEKTPEPKSAEPKPTDVPAXXXXXXXXXXXXXXXXVPSKSKDTPAKVNEVPTEVSEKSA 573
+ + P S+ T P+ S S + + + + S S+
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 574 SPDKPIDVGSATKPDAPVTHDGPSEHVTSKTVKKVDSSGA 693
S S++ P+T S H +S + SS +
Sbjct: 197 SSSS----SSSSSSSVPITSSTSSSHSSSSSSSSSSSSSS 232
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 502 VPSKSKDTPAKVNEVPTEVSEKS--ASPDKPIDVGSATKPDAPVTHDGPSEHVTSKTVKK 675
+PS+S +PA N+V E + K+ P V + + T D + KT+
Sbjct: 20 IPSRSASSPANKNQVKGEKNNKTQKVEPKNAFKVENQSNDIGVDTVDAFDHLLLDKTLPT 79
Query: 676 VDS 684
+D+
Sbjct: 80 IDA 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.127 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,211
Number of Sequences: 5004
Number of extensions: 41720
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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