Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M13
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    28   0.67 
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   6.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.3  

>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 348 GGVAETCGSAGRPHASNICGINERGGDGDFFERFNGASVTSTCS 479
           G +  TC +    H        ER   GD F  F G     TC+
Sbjct: 333 GSIQSTCSNIEEKHLGTCDTFEERQIGGDRFNLFEGCPKAKTCT 376


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 390 REAGLRSRTSPPPHPD 343
           RE G RS  SPPP P+
Sbjct: 73  REFGQRSEPSPPPPPE 88


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 426 DGDFFERFNGASVTSTCSAST 488
           D D +  ++GASVTS CS+ T
Sbjct: 279 DLDDYTVYDGASVTSNCSSIT 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,006
Number of Sequences: 5004
Number of extensions: 26300
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)