Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M13
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    27   6.3  
12_02_0403 - 18627246-18627557,18627904-18628836                       27   8.3  

>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 411 NERGGDGDFFERFNGASVTSTCS 479
           ++ GGD DFF R+N   +  +C+
Sbjct: 115 DDDGGDRDFFARYNNDDMVGSCN 137


>12_02_0403 - 18627246-18627557,18627904-18628836
          Length = 414

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 420 GGDGDFFERFNGASVTSTCS 479
           GGD DFF R+N   +  +C+
Sbjct: 88  GGDRDFFARYNNDDMVGSCN 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,152,258
Number of Sequences: 37544
Number of extensions: 206263
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)