Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M13
         (495 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76785-2|CAA54180.1|  342|Homo sapiens hypothetical protein prot...    29   6.7  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    29   8.9  

>X76785-2|CAA54180.1|  342|Homo sapiens hypothetical protein
           protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 82  HYYINNQMTEHAHIRTLQYTHKHTAT 159
           H + N Q   HAH  TL + H HT T
Sbjct: 125 HSHTNTQKHTHAHSHTLSHCHIHTHT 150


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 82  HYYINNQMTEHAHIRTLQYTHKHTAT 159
           H +I+  +  HAH  TL YTH HT T
Sbjct: 68  HRHIHTHICTHAH--TLTYTHIHTCT 91



 Score = 29.1 bits (62), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  HYYINNQMTEHAHIRTLQYTHKHTAT 159
           H Y++     H+HI T  +TH HT T
Sbjct: 220 HIYMHAHTPIHSHIHTWTHTHAHTYT 245


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,355,914
Number of Sequences: 237096
Number of extensions: 1028361
Number of successful extensions: 2367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2353
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)