Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M11
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    27   2.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 415 KQVSVRLHDRGINYNEDEMLNSLYNIL*HEK 323
           KQ  + L  RG+ Y +  +LN L +++ H K
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSK 72


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 65 SGCMRTIHKSEFSRHRHTYPR 3
          SG +RT+HK + +R+R  Y R
Sbjct: 3  SGPIRTLHKGKAARNRTPYDR 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,159
Number of Sequences: 5004
Number of extensions: 41596
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)