Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M11
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     29   2.6  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   5.9  
07_03_0598 + 19858004-19858192,19858295-19858926,19859001-198590...    27   7.8  

>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +2

Query: 80  NDSDSTAVTMSATQCFLPILT 142
           N+++S + T++A QC+LPI+T
Sbjct: 246 NNNNSNSATVNAQQCYLPIVT 266


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 SCGYTFTIGTCIFYRLSIKNKCKCLN 267
           +CG+ FT+  C+   LS K++  C N
Sbjct: 536 ACGFNFTMAICLHRPLSSKDQSVCSN 561


>07_03_0598 +
           19858004-19858192,19858295-19858926,19859001-19859057,
           19859159-19859397,19859903-19860097,19860140-19860226,
           19861086-19861201
          Length = 504

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 RGPRCTHTYSVFVWLHFHN 212
           R PRC  T++ F W  FH+
Sbjct: 211 RSPRCAATWTGFTWAAFHD 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,019
Number of Sequences: 37544
Number of extensions: 253206
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)