Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M10
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   2.2  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   8.8  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 329 PHAILQVIPT*TFLWKLQMITTHPLAKF*FDFK 231
           P A+L  +P     WK+    THPL K   DF+
Sbjct: 468 PKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFR 500


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 193 HVTKKCVHILKDTKYVSSLN 134
           +V  +C+HILK T+  SS N
Sbjct: 210 YVENECIHILKLTEKYSSQN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,215
Number of Sequences: 5004
Number of extensions: 36016
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)