Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M10
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine re...    31   0.36 
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    31   0.48 
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical ...    29   1.5  
U64836-2|AAG24060.2|  137|Caenorhabditis elegans Serpentine rece...    28   3.4  
U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine rece...    28   3.4  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U41023-4|AAA82343.2|  414|Caenorhabditis elegans Adaptin, mu/med...    27   7.8  

>AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein93 protein.
          Length = 322

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -1

Query: 258 FSKILI*FQKYTVARTSIEHSNMLPKNVFIYLRTLNTSLL*IIDYSFSFFL 106
           F KIL  ++K   ++ ++E    + KN+  +++T+    L +ID +F+F L
Sbjct: 201 FLKILHFYKKSNSSQVAVEAKKRMRKNILNFIQTILLDSLYLIDITFTFEL 251


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 312 SYTYINIFMEIANDYNP-----PFSKILI*FQKYTVARTSIEHSNMLPKNV 175
           SY+ IN F +     NP     P SKI+  ++KY  +RT+IE      K +
Sbjct: 171 SYSSINSFDDFEKIRNPSEFVDPISKIVSGYKKYNASRTTIERDGNFAKGM 221


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 216 RTSIEHSNMLPKNVFIYLRTLNTSLL*IIDYSFSFF 109
           +T  E    + KN++++++T+    L +ID SF+F+
Sbjct: 222 KTDKESRKRIKKNIYLFIQTVLQDSLYLIDISFTFY 257


>AL022272-3|CAA18353.1|  322|Caenorhabditis elegans Hypothetical
           protein H12C20.5 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 258 FSKILI*FQKYTVARTSIEHSNMLPKNVFIYLRTLNTSLL*IIDYSFSFFL 106
           F KIL  ++K    + ++E      KN+ ++L+T+    L  ID +F+F L
Sbjct: 201 FLKILHFYRKSRKTQEAVEVKKRWRKNIALFLQTILQDSLYFIDMTFTFEL 251


>U64836-2|AAG24060.2|  137|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform a protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 258 FSKILI*FQKYTVARTSIEHSNMLPKNVFIYLRTLNTSLL*IIDYSFSFFL 106
           F KIL  ++K     T +     + KN+  +L+T+    L  ID +F+F L
Sbjct: 17  FLKILHSYKKSRKTETVVGARKRMCKNILCFLQTILQDSLYFIDMTFTFKL 67


>U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform b protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 258 FSKILI*FQKYTVARTSIEHSNMLPKNVFIYLRTLNTSLL*IIDYSFSFFL 106
           F KIL  ++K     T +     + KN+  +L+T+    L  ID +F+F L
Sbjct: 201 FLKILHSYKKSRKTETVVGARKRMCKNILCFLQTILQDSLYFIDMTFTFKL 251


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 231 KYTVARTSIEHSNMLPKNVFIYLRTLNT 148
           K  V   S  H N+LP  VF YLR L +
Sbjct: 136 KLRVLDLSSNHLNILPTGVFTYLRALRS 163


>U41023-4|AAA82343.2|  414|Caenorhabditis elegans Adaptin, mu/medium
           chain (clathrinassociated complex) protein 3 protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 146 LFFELLTIRFLSSFKVENNVNIKREMIKPVSFLQ 45
           + FELL     + F +   +NI +++IKP +FL+
Sbjct: 108 MVFELLDEMLDNGFPLVTEMNILQDLIKPPNFLR 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,709
Number of Sequences: 27780
Number of extensions: 195647
Number of successful extensions: 361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)