Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M09
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 104 5e-23
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 104 5e-23
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 99 2e-21
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.014
06_01_0008 + 141405-142421 29 2.9
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 2.9
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 27 6.7
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 27 8.8
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632... 27 8.8
06_03_0630 + 22926652-22928133 27 8.8
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 104 bits (249), Expect = 5e-23
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +2
Query: 80 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 247
MSWQ YVD+ LM ++ AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 248 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 424
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 425 KLGDYLITCG 454
+LGDYL+ G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 104 bits (249), Expect = 5e-23
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +2
Query: 80 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 247
MSWQ YVD+ LM ++ AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 248 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 424
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 425 KLGDYLITCG 454
+LGDYL+ G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Frame = +2
Query: 80 MSWQDYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 247
MSWQ YVD LM ++ AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 248 TSGGVTIAGTRYIYLSGTERI-IRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 424
G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 425 KLGDYLITCG 454
+LGDYLI G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.014
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 173 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 265
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>06_01_0008 + 141405-142421
Length = 338
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 213 FATSSFDISNPSDLAQTF 160
FA+ SFD+ NPSDLA F
Sbjct: 69 FASPSFDLRNPSDLAAFF 86
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 241 TSNKRRCYDSGHAVHLPQRYRTYHTRKARQGRRALHEDTASRRNFSL*RTHSTPAGRIRS 420
TS++RR H +R+R+ +R RR+L D RN R+H AGR R
Sbjct: 906 TSSERR---DRHDDSSRKRHRSL-SRSRSPPRRSLERDREHNRNRDTDRSHGNDAGRERD 961
Query: 421 R 423
R
Sbjct: 962 R 962
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 200 DEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTERIIRAKLGKVG 337
DE+A + GF E ++ GG G Y+ G R + K KVG
Sbjct: 159 DELAAVTGGFAEEKVIGEGGF---GKVYMGALGDGRCVAVKQLKVG 201
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 322 LCAYDTFCTAEVDVPRARYR 263
L AY FCTA D+PRA R
Sbjct: 332 LHAYSAFCTAVGDLPRAERR 351
>09_02_0253 -
6319198-6319240,6319364-6319552,6319650-6319995,
6320811-6320893,6320977-6321074,6321384-6321461,
6321891-6322000,6322083-6322180,6323199-6323296,
6323403-6323463,6323688-6323831,6324103-6324206,
6324634-6324787,6324860-6324879,6324967-6325029,
6326521-6326632,6326711-6326796,6326872-6326899,
6327242-6327293,6329034-6329250
Length = 727
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -2
Query: 357 CVFMQCTPTLPSFARMIRSVPLR*MYRVPAIVTPPLVRSDSFSKPATIFATSSFDISNPS 178
C Q +P LP+FA + +PLR R P++R+ S A + + P
Sbjct: 571 CHLRQFSPFLPNFASGLTKIPLRAGSR-------PVLRNTSSGCAAAAACADQYSAATPD 623
Query: 177 DLAQTF 160
+ + TF
Sbjct: 624 NSSVTF 629
>06_03_0630 + 22926652-22928133
Length = 493
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 122 RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIA 271
RCV A G DG V A++E + E + + VA + N SG VT A
Sbjct: 438 RCVELAMAGGGDGGVRARAERWRERAAEAVAAGGSSERNLRAFASGAVTQA 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,240
Number of Sequences: 37544
Number of extensions: 266181
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -