Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M08
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    29   0.38 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   1.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   2.0  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   3.5  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   6.1  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   6.1  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    24   8.1  

>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 165 GHNTYEQILLSYFFIIPKHSYDVFFIQK 82
           G  T E  ++SY F   K+ ++VFF QK
Sbjct: 78  GRGTPEDHVISYLFEAGKYEFEVFFYQK 105


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 264 ITHVFTHTGLITIVT*WSDWSQTSQHITKPIMHGHNTYEQILLS---YFFII 118
           +  +F  +  I+I+    DW+Q S +I  P+M   +    ILL    +F+I+
Sbjct: 302 VNQIFGESTGISILPMTFDWNQISAYILSPLMAPADALMNILLGVILFFWIV 353


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 216 WSDWSQTSQHITKPIMHGHNTYEQILLS 133
           +  W    +HIT+ IMH +N     L+S
Sbjct: 413 FQSWGHVVKHITQSIMHNNNLKNHELVS 440


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 143 YFFLIFLSSQNIRMMFFSYK--NSTTNLQNK*KKNY 42
           YFFL+F+ +Q + +    Y+  ++T N+  K   NY
Sbjct: 10  YFFLVFIGAQAMDLDITDYQSIDNTVNIMMKDLMNY 45


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 143 ICSYVLCPCMMGLVIC*LVCDQSLHYVTIVIKPVCVNTCVIAIYI 277
           IC +VL   ++GL+ C  +  +++  ++IVI  V V   V  + I
Sbjct: 128 ICLFVLL--LLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKI 170


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 143 ICSYVLCPCMMGLVIC*LVCDQSLHYVTIVIKPVCVNTCVIAIYI 277
           IC +VL   ++GL+ C  +  +++  ++IVI  V V   V  + I
Sbjct: 128 ICLFVLL--LLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKI 170


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 143 ICSYVLCPCMMGLVIC*LVCDQSLHYVTIVIKPVCVNTCVIAIYI 277
           IC ++L   ++GL+ C  +  +++  ++IVI  V V   V  + I
Sbjct: 128 ICLFILL--LLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,574
Number of Sequences: 5004
Number of extensions: 34073
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)