Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M08
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.4  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   4.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   4.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 251 NTCVIAIYITISSCSAFESISMTCKYVLEL 340
           N   I I  T   CS F   +++CK    L
Sbjct: 84  NRMYIEIKFTTRDCSLFPGNALSCKETFSL 113


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 273 YIAITHVFTHTGLITIVT*WSDW 205
           +I I  +F   GLIT V   SDW
Sbjct: 56  HIIIVGLFYEFGLITHVKLSSDW 78


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 125 LSSQNIRMMFFSYKNSTTNLQNK*KKNYN 39
           +SS +    + +Y N   N  N    NYN
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 125 LSSQNIRMMFFSYKNSTTNLQNK*KKNYN 39
           +SS +    + +Y N   N  N    NYN
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 307 GFER*TTTNSYVYCNNTCIY 248
           GF+    TN  V  N TC+Y
Sbjct: 119 GFDGTYPTNVVVKNNGTCLY 138


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 203 HKRVNI*LNPSCTDTIHMNRY 141
           +KR      P  TD+ H +RY
Sbjct: 159 YKRPRTTFEPRATDSRHYDRY 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,871
Number of Sequences: 438
Number of extensions: 2568
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)