Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M07
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   4.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   4.4  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   5.8  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   5.8  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   7.6  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 483 AWGSFTTTSPTLTWVVLTMVAAAFVS 406
           +W SF+ +SP + W+  T +++A +S
Sbjct: 195 SWLSFSKSSPVVLWLTFTRISSAGLS 220


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -3

Query: 555 LFLTLIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCI 400
           LFL  I L  P I   S + + TSA+ SF      L W V+      F+ CI
Sbjct: 803 LFLVGIVLSIPKINGISISNNETSAYLSF------LLWSVVAFSVFRFIGCI 848


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 372 GTSNSGCFIAFLPGNHGKLHRLSVAYRTHSLARVVS 265
           GT N GC +   P     L RLS+     S+A  ++
Sbjct: 832 GTQNVGCLLRIEPNYEQNLIRLSIRSTNTSIANTLA 867


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 364 TGPGGESVKGSPYAAD 411
           TG GGES+ G P+A +
Sbjct: 71  TGMGGESIYGEPFAVE 86


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 187 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK 282
           N K  Y + + ++  E +F   T I+ NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 288 HSLARVVSDYRSLMYKHIFFGVIPIDETISTLDVE 184
           H LA VV D + +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,047
Number of Sequences: 5004
Number of extensions: 31211
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)