Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M07
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 73 2e-13
08_01_0202 - 1638978-1639571 72 3e-13
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 33 0.12
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 30 1.5
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 30 1.5
10_08_0081 + 14710478-14710822 29 1.9
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 29 3.4
07_01_0934 + 7870920-7871454,7871533-7872413,7873313-7873414 29 3.4
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 28 4.4
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 28 4.4
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 28 4.4
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 28 5.9
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 154 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 333
A + GTVKWFN G+GFI+ +D ED+FVHQ++I RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAISE 59
Query: 334 GEKG-YEAARVTGPGGESVKG 393
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>08_01_0202 - 1638978-1639571
Length = 197
Score = 72.1 bits (169), Expect = 3e-13
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 154 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 333
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGS 58
Query: 334 GEKG-YEAARVTGPGGESVKG 393
G G +A VT PGG ++ G
Sbjct: 59 GNDGRTKAVDVTAPGGGALTG 79
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 275 LARLCVR*ATERRWSLPWLPGRKAMKQPELLVPAVNPS-RVHLMQLTNAAATIVNTTHVK 451
+A L VR RW LPW + LLV V P+ V +L AA + + HV
Sbjct: 334 MASLVVRFTGPERWILPWRVSTRLRSLRRLLVADVPPTWDVSWPRLLLQAAPSLESLHVH 393
Query: 452 VGDVVVKEPHAEVVSGAVDLHP 517
V +P A G + P
Sbjct: 394 VAATADDQPAAAAAPGREIMWP 415
>06_01_0581 -
4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 311 RWSLPWLPGRKAMKQPEL---LVPAVNPSRVHLMQLTNAAATIVNTTHVKVGDVVVKEPH 481
R +L + G + +PE +V +N + +L + +I++TT V+ G V ++E
Sbjct: 404 RSALAAVAGLVEVSRPEANPNIVDNLNQMELCTNKLLDILNSILDTTKVESGKVQLEEVE 463
Query: 482 ---AEVVSGAVDLHPIKGVHKGMRV 547
A+V+ +VD+ + G+ KG+ V
Sbjct: 464 FNMADVLEESVDMANVVGITKGIEV 488
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 274 GCFGLSQFDVQTHLLWCHS 218
GC+GL QF ++ LL CHS
Sbjct: 1107 GCYGLPQFRMRVFLLGCHS 1125
>10_08_0081 + 14710478-14710822
Length = 114
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 513 WRSTAPDTTSAWGSFTTTSPTLTWV 439
W S AP TT+AWG+FT W+
Sbjct: 44 WSSNAP-TTNAWGAFTAPRTVPRWL 67
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 175 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 354
V W+ G + ++ A + NPR+A + D + E AVV G YE+
Sbjct: 439 VFWWGDDEGESSAAARRWLDALYAAMEAAVSGNPREAFVNYRDLDIGENAVVGGVTEYES 498
Query: 355 AR 360
AR
Sbjct: 499 AR 500
>07_01_0934 + 7870920-7871454,7871533-7872413,7873313-7873414
Length = 505
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -3
Query: 486 SAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTSNSGCFIAFLPGNHGKLHRL 307
+AWG + P L WV+ + + DGF A T G +++ P H
Sbjct: 310 AAWGIANSGHPFL-WVLRPGLVRGAAAAAA-LPDGFDAATRGRGAVVSWAPQEEVLAHPA 367
Query: 306 SVAYRTH 286
+ A+ TH
Sbjct: 368 TAAFWTH 374
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 285 SLARVVSDYRSLMYKHIFFGVIPIDETISTL 193
SL R+ DY L Y+H +PI+ET+ L
Sbjct: 115 SLERLAVDYIDLYYQHRIDQSVPIEETMGEL 145
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 253 TAIIRNNPRKAVRSVGDGEAVEFAVVAG 336
TAI+ N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 285 SLARVVSDYRSLMYKHIFFGVIPIDETISTL 193
SL R+ DY L Y+H IPI++TI L
Sbjct: 147 SLGRLGVDYIDLYYQHRVDTTIPIEDTIGEL 177
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +1
Query: 187 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVT 366
+V+ G ++ ++ ++D+F II+N RK VG + KG + +
Sbjct: 581 DVQIGTALLDDDEPQDDLFKSFDDIIKNPGRKTTVEVGMLADNSWKKFKSSKGNDGSNTN 640
Query: 367 GPGGESVKGSPYAADKR 417
G +S Y AD++
Sbjct: 641 GDIDKSTVKVSYMADQK 657
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,790
Number of Sequences: 37544
Number of extensions: 234006
Number of successful extensions: 786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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