Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M07
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   1e-07
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   2.0  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)                   28   6.0  
SB_58020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 151 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 330
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI         +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAI----QSDGFKSLKEGQAVTFVAT 66

Query: 331 AGEKGYEAARV 363
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 340 KGYEAARVTGPGGESVKGSPYAADKRR 420
           +G EA+ VTGP GE V+GS YA D+RR
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRR 39


>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 1142

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 437 TTHVKVGDVVVKEPHAEVVSGAVDLHPIKGVHKGMRVRNRA 559
           +T++ V D ++ EP A  V     +H I+G+   ++VRN A
Sbjct: 235 STYLLVVDSILSEPLARTVIVFAQVHQIRGLLHAVQVRNAA 275


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 154 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 327
           AEK  G V   ++K  +GFI R D   ++F H +  + +     +  +  G+ VEF +
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFHYSEFLDD-----INELTLGDDVEFII 251


>SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +1

Query: 151 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV 330
           +A+  +    +  VKSGY   +  DTK +V   Q A     P+   R+ GD         
Sbjct: 60  MADGYTAFFSFSRVKSGYSVFSGKDTKAEVPSLQAAQHLPEPKGRKRTTGDAINPLAVTT 119

Query: 331 AGEKGY 348
             + GY
Sbjct: 120 PSDSGY 125


>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1671

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 549 LTLIPLCTPLIGWRSTAPDTTSAWG-SFTTTSPTLTWVVLTMV 424
           L ++  C+P++GW        SA+G S      T++W  L +V
Sbjct: 82  LAMLDECSPVLGWVPVCCFVVSAFGISLFAQHETVSWKTLRLV 124


>SB_58020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 317 SLPWLPGRKAMKQPELLVPAVNPSRVH 397
           SL WLP   + K P+L + + +P+R H
Sbjct: 45  SLVWLPQLSSYKTPQLNIISTSPTRQH 71


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 552  FLTLIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLT 445
            F T  P  TP +   +TAP  T+  G    T+PT T
Sbjct: 893  FPTPAPTTTPWVWPNATAPTATTPSGGGNETAPTAT 928


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 281  LRGLFRIIAV*CTNTSSLVSFLLMKPYPLLTLNH--LTVP--ETFSAMTCF 141
            LR  + ++ V   +T   ++  L  PYPLLT+ +  LT+P   T+  +T +
Sbjct: 1590 LRYPYALLTVPLRSTYDTLTLYLRYPYPLLTIPYALLTIPLRSTYDTLTLY 1640


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,892
Number of Sequences: 59808
Number of extensions: 259020
Number of successful extensions: 751
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)