Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M07
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 133 9e-32
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 88 4e-18
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 85 2e-17
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 85 2e-17
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 85 3e-17
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 1e-08
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 1e-08
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 1e-08
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 1e-08
AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Pharyngeal g... 31 0.57
AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical ... 31 0.57
AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical ... 30 0.99
Z80344-1|CAB02485.1| 183|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 7.0
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 7.0
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 27 7.0
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 7.0
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 7.0
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 7.0
AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical ... 27 7.0
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 27 9.2
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 133 bits (321), Expect = 9e-32
Identities = 62/89 (69%), Positives = 69/89 (77%)
Frame = +1
Query: 148 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 327
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 328 VAGEKGYEAARVTGPGGESVKGSPYAADK 414
V G KG EAA VTGP G V+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 151 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 327
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 328 VAGEKGYEAARVTGPGGESVKGSPY 402
V G+ G EAA VTGP G++V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.4 bits (202), Expect = 2e-17
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +1
Query: 148 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 315
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 316 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 405
F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.4 bits (202), Expect = 2e-17
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +1
Query: 148 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 315
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 316 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 405
F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 85.0 bits (201), Expect = 3e-17
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +1
Query: 148 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFA 324
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI +++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 325 VVAGEKGYEAARVTGPGGESVKGSPY 402
+V G+ G EAA VTGP G +V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 342
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 343 GYEAARVTGP-GGESVKGS 396
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 342
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 343 GYEAARVTGP-GGESVKGS 396
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 342
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 343 GYEAARVTGP-GGESVKGS 396
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 56.4 bits (130), Expect = 1e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 342
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 343 GYEAARVTGP-GGESVKGS 396
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Pharyngeal
gland toxin-relatedprotein 4 protein.
Length = 248
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = -3
Query: 543 LIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTS 364
L P IG+ + D + +TT +PT VV M AA +C + GF T
Sbjct: 52 LYPPADAAIGYPAAGNDAERPFACYTTATPTPAPVVADMKTAALANCAK--TCGFCCSTD 109
Query: 363 NSGC 352
C
Sbjct: 110 AYNC 113
>AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.3 protein.
Length = 248
Score = 31.1 bits (67), Expect = 0.57
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 543 LIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTS 364
L P P G+ + D + +TT +PT VV M +AA +C R G TS
Sbjct: 55 LYPASDPATGYPAPGNDVERPFACYTTATPTPAPVVPDMRSAALKNCAR--TCGLCCKTS 112
Query: 363 NSGC 352
+ C
Sbjct: 113 DFDC 116
>AF016418-6|AAK18899.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.4 protein.
Length = 248
Score = 30.3 bits (65), Expect = 0.99
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 543 LIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR 397
L P P G+ + D + +TT +PT VV M +AA +C R
Sbjct: 55 LYPASDPATGYPAPGNDVERPFACYTTATPTPAPVVPDMRSAALKNCAR 103
>Z80344-1|CAB02485.1| 183|Caenorhabditis elegans Hypothetical
protein F15D4.2 protein.
Length = 183
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +1
Query: 148 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 327
++AE V+W V+ I R +KEDV A I +K + +V GE +E +
Sbjct: 24 LLAEHTMNAVEWEAVEVLMPRILRGKSKEDVKQLLLAEIDGMSKKRLDAVLAGETLEESS 83
Query: 328 VAGEKGYEAARVTGPGGESVK 390
+ + E +V G GES K
Sbjct: 84 SSED---EEEQVIGSAGESEK 101
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 507 STAPDTTSAWGSFTTTSPTLTWVVLT 430
+TAP TT+ + TTT+PT T V T
Sbjct: 193 TTAPTTTTTTPTTTTTTPTTTTTVPT 218
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 228 GVIPIDETISTLDVEPFDSTRNL 160
G PID++ S++DV+P S+ NL
Sbjct: 1896 GTAPIDDSDSSMDVDPAGSSDNL 1918
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 228 GVIPIDETISTLDVEPFDSTRNL 160
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 228 GVIPIDETISTLDVEPFDSTRNL 160
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 214 NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 342
NRN K +F+ +I+ N PR +GDG E ++ EK
Sbjct: 131 NRNTMKAGIFIIIFSIVFNFPRFFDYKIGDGYLSEMWMLDTEK 173
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 228 GVIPIDETISTLDVEPFDSTRNL 160
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 525 PLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR 397
PL+G +P TS+W + P L ++LT++ C++
Sbjct: 3891 PLVGRLRASPYITSSWPWWWLLLPLLAALLLTLLCCCIPWCLK 3933
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 525 PLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR 397
PL+G +P TS+W + P L ++LT++ C++
Sbjct: 3891 PLVGRLRASPYITSSWPWWWLLLPLLAALLLTLLCCCIPWCLK 3933
>AF016445-8|AAC69052.1| 244|Caenorhabditis elegans Hypothetical
protein T05B4.12 protein.
Length = 244
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -3
Query: 495 DTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTSNSGCFIAFLP 334
D A+ +TT + T VV M AA SC + GF T + C A P
Sbjct: 66 DAERAYACYTTATATPAAVVADMKTAAIASCAK--TCGFCCLTDDYNCANAAYP 117
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 507 STAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCIR*TLDGFTAGTSNS 358
+T P TTS + TTT+PT T + S T T T+ +
Sbjct: 62 TTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTT 111
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 178 KWFNVKSGYGFINRNDTKEDVFVHQTAII---RNNPRKAVRSVGDGEAVEFAVVAGEKGY 348
+W NVK+ ++ ++ + +F+ II RN A R + +E A + G GY
Sbjct: 230 QWLNVKTDINSVSLENSDDSIFMQMFNIISHERNRRWYAYRREHESLTLEEAYLIGNGGY 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,053
Number of Sequences: 27780
Number of extensions: 184168
Number of successful extensions: 639
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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