Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M06
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    23   4.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.3  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    22   9.3  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 99  NTPINFFSHVLRKNQQQKNSRASSLHSC 16
           +TP++ F   + KN+  K   A  + SC
Sbjct: 361 STPVSKFGEAIEKNKWPKKLSAGLIGSC 388


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 99  NTPINFFSHVLRKNQQQKNSRASSLHSCRIH 7
           +TP+  F H+L  N    N  +SS  S ++H
Sbjct: 263 DTPL--FEHLLNSNSSGGNHSSSSSSSGKVH 291


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 65  EKINNRKTRELVLSTRAEFT 6
           EK+N ++TR +V++  A+ T
Sbjct: 244 EKVNKKRTRVVVITQGADAT 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,655
Number of Sequences: 5004
Number of extensions: 6034
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)