Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M05
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    27   1.3  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    26   3.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   5.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   7.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po...    25   7.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.2  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    24   9.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    24   9.5  

>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 279 PSPVRSL-VVPAELGNSADANFNKLKPRAEFGTRRASLRRNLENNPK 416
           PS V  + +   ELG S + N  KLK R +F  +R   +R  E   K
Sbjct: 22  PSTVEEIRIALQELGLSTNGNKEKLKRRWKFREKRLEEKRKQERYQK 68


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 233 GVATVWHQPIRLGIIYS*QVKTGIQHFTESIVP*IKSL 120
           G  + W+QP+ +  +    +  GIQH +  I+  I S+
Sbjct: 216 GALSCWNQPLEVARVEMQSLTKGIQHSSPGIMQTIMSI 253


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 334 ASALFPSSAGTTNDRTGDGSQSSP 263
           +  +F     + ND TG+GSQ+SP
Sbjct: 15  SDVVFYIDEASGNDETGNGSQTSP 38


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 364  SARGFSLLKFASALFPSSAGTTNDRTGDGSQS 269
            + R FS+L+ A +L  S +G++ + +GD + S
Sbjct: 1024 TGRRFSILREAGSLRESMSGSSRNSSGDYTDS 1055


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +3

Query: 189 DDAKPNRLVPNCSNALSISTLKFHNGED*LPSPVRSLVVPAELGNSADANFNKLKPRAEF 368
           D  +     PN   A   +T+ F    D + S +    + + + +  D NF+ L  R ++
Sbjct: 505 DSGEHGESYPNLKLATQTTTMFFEVLSDSVNSQLPLQALTSGVSSKKDGNFDDLVERRQY 564

Query: 369 GT 374
           G+
Sbjct: 565 GS 566


>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 PRAEFGTRRASLRRNLENNP 413
           P+A++G R+  ++  L NNP
Sbjct: 240 PKADYGARQGEVKGLLSNNP 259


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 224 TVWH-QPIRLGIIYS*QVKTGIQHFTESI 141
           TVW  +PI  GI+Y+  ++TG+     SI
Sbjct: 162 TVWFVEPIDGGILYAFNLQTGLVRLPHSI 190


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 319 PSSAGTTNDRTGDGSQSSPLWNFKVDILRALLQ 221
           PS  G T   TGD S    +W     +  ++LQ
Sbjct: 627 PSRKGFTGYFTGDASPKDRIWGTSACVTASVLQ 659


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 150 SKVLNTSFYLLRVDDAKP 203
           S +LNT+ Y LR DD  P
Sbjct: 317 SAILNTNKYTLRPDDCAP 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,875
Number of Sequences: 5004
Number of extensions: 29123
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)