Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M05
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0246 + 1809762-1809803,1810383-1810557,1810678-1810763,181...    28   4.0  
03_05_0496 - 24920645-24920655,24921388-24921547,24921788-249218...    27   7.1  
11_06_0181 + 20985960-20987825,20987904-20989169                       27   9.3  
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756...    27   9.3  
06_03_0339 - 19687749-19690805                                         27   9.3  

>07_01_0246 +
           1809762-1809803,1810383-1810557,1810678-1810763,
           1810871-1810921,1811003-1811146,1811299-1811343,
           1811578-1811633,1811744-1811819,1811908-1812006
          Length = 257

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 270 D*LPSPVRSLVVPAELGNSADANFNKLKPR-AEFGTRRA 383
           D  P  VR ++VP +LG   D ++NKL P+   F  +RA
Sbjct: 192 DMAPGGVRRIIVPPDLG-YPDNDYNKLGPKPTTFSGQRA 229


>03_05_0496 -
           24920645-24920655,24921388-24921547,24921788-24921828,
           24922029-24922521,24923503-24923616,24925728-24925955,
           24926405-24926650,24927690-24927831,24929263-24929354
          Length = 508

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 390 VKTHASSRIRHEASAY*NSHQRYSLALPVQPTTAPVMVVNLHHYGTSRWI 241
           +K   ++  R  A AY  +HQR + +   +PTT   + ++  H+G S W+
Sbjct: 254 LKRQEAAAKRERAMAYALTHQRQAGSRQQKPTTPQGLELDDSHWG-SNWL 302


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 147 FSKVLNTSFYLLRVDDAKPNRLVPNCSNALSIS 245
           FS +  T  ++   D+ KP  LVP  S+  SIS
Sbjct: 253 FSAMKQTKSHICAFDNDKPGTLVPKSSDLKSIS 285


>07_03_0169 +
           14670994-14673714,14673799-14673879,14675460-14675612,
           14675910-14676073,14676162-14676309,14676426-14676548,
           14676754-14676841,14677493-14677674
          Length = 1219

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 315 ALPVQPTTAPVMVVNLHHYGTSRWIY 238
           A  + P   PV+ +N+H+Y   RW +
Sbjct: 777 AQSLSPFNEPVLSLNMHNYEPQRWSF 802


>06_03_0339 - 19687749-19690805
          Length = 1018

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 396 FGVKTHASSRIRHEASAY*NSHQRYSLALPVQPTTAPVMVVNLH 265
           + +K +AS RI      Y  S +      PV+PTT PV + N+H
Sbjct: 127 YDMKRNASVRIGSARVPYQQSRR----TAPVRPTTTPVNLHNVH 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,497
Number of Sequences: 37544
Number of extensions: 188208
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)