Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M05
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    27   4.8  
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical
           protein T08E11.4 protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 454 KFTRTNRHGSFTHFGLFSRFRRKDARLVPNSARGFSL 344
           KF R  + G F   G FS++     R +PNS + FS+
Sbjct: 382 KFARLGKFGKFATLGKFSKYY---IRTMPNSCKEFSI 415


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical protein
            F17C11.10 protein.
          Length = 1101

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 385  DARLVPNSARGFSLLKFASALFPSSAGTTNDRTGDGSQSSPLWNFKVDI 239
            D  + P      +  K   A  P+      D+T DG +SS  +N  +D+
Sbjct: 880  DTEIWPTKRIALAARKAQKAPSPTVESLNEDQTNDGDESSSRYNLNMDV 928


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 333 HQRYSLALPVQPTTAPVMVVNLHHYGTSRWIY*GRCYSLAPAY*AWHHLLLASKNWYSTL 154
           ++R+   LP+   +  V +V+ H +    W    R YSLA  +   + LL+   N Y   
Sbjct: 64  YRRFRRILPLYYLSIVVTLVSAHFWLREFWWDVNRRYSLAATFLVTNQLLIQDLNDYFQQ 123

Query: 153 Y 151
           Y
Sbjct: 124 Y 124


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 333 HQRYSLALPVQPTTAPVMVVNLHHYGTSRWIY*GRCYSLAPAY*AWHHLLLASKNWYSTL 154
           ++R+   LP+   +  V +V+ H +    W    R YSLA  +   + LL+   N Y   
Sbjct: 64  YRRFRRILPLYYLSIVVTLVSAHFWLREFWWDVNRRYSLAATFLVTNQLLIQDLNDYFQQ 123

Query: 153 Y 151
           Y
Sbjct: 124 Y 124


>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 378 ASSRIRHEASAY*NSHQRYSLALPVQPTTAPVMVVNLHHYGTSRWI 241
           +S R +  +S+  +  Q  S  +P+ P +AP   V   H   S WI
Sbjct: 521 SSMRFKENSSSVGSGDQNVSATIPIVPLSAPPKAV---HQSPSSWI 563


>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 378 ASSRIRHEASAY*NSHQRYSLALPVQPTTAPVMVVNLHHYGTSRWI 241
           +S R +  +S+  +  Q  S  +P+ P +AP   V   H   S WI
Sbjct: 521 SSMRFKENSSSVGSGDQNVSATIPIVPLSAPPKAV---HQSPSSWI 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,852
Number of Sequences: 27780
Number of extensions: 156888
Number of successful extensions: 388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)