Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M04
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                33   0.14 
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     31   0.44 
SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)                      30   1.0  
SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)                       29   3.1  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    28   4.1  
SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              27   7.2  
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 345 R*LRQAQHRQVPATHQRCSNRY---NKSIRALHA 437
           R LRQ QHR +PA +Q C+ RY   NK + A  A
Sbjct: 21  RSLRQTQHRTLPACYQLCNRRYVSTNKPVSAAAA 54


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 269 TVLTDPTIERPETIPGLSSSGTNRLKVTETGSTQA-STRDSSEVFKSLQQ 415
           TVL+D T E PET    +S  T     T T +T A +TR S+ V  +L Q
Sbjct: 851 TVLSDGTTENPETTE--ASKTTTEAPATTTATTTATTTRGSATVSNALSQ 898


>SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)
          Length = 957

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 272 VLTDPTIERPETIPGLSSSGTNRLKV--TETGSTQASTRDSSEVFKSLQQKY*SITCQFN 445
           VL  PT    +T  GL + G NRL V   E G      R  S +FK+L +   S TC  +
Sbjct: 442 VLVCPTFVYNKTYDGLPARGDNRLFVIAPEVGQIDILLRFVSALFKALIRLSYSTTCAPS 501

Query: 446 K 448
           K
Sbjct: 502 K 502


>SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)
          Length = 554

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +2

Query: 230 FVDVGEAKIGLIVTVLTDPTIERPETIPGLSSSGTNRLKVTETGS 364
           F D+   KI +IVTV  DPT E  ETI   S      L    TG+
Sbjct: 115 FADLLHFKIIIIVTVHGDPTAECIETIEPRSGITVQTLYFGRTGN 159


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 252 FASPTSTKHCLLCNILNINKIYHL 181
           +ASP  TK CL  ++L I K+Y +
Sbjct: 41  YASPMDTKPCLDIDLLEIRKVYQV 64


>SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +2

Query: 227 CFVDVGEAKIGLIVTVLTDPTIERPETIPGLSSSGTNRLKVTETGSTQASTRDSSEVF 400
           CF+ +G           + PT  RP T    S + T +L   E  S+  S  D  E +
Sbjct: 18  CFIAIGAETTTAKPKTTSSPTPTRPNTTATTSPTPTPKLSCEERNSSCGSCTDDYECY 75


>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 89  PTTTVGGTRASQSFTPSRNQPPIESGIPR 3
           P TT GG  ++ S TP+ N P     IP+
Sbjct: 125 PQTTPGGATSAASATPNGNAPTASPTIPK 153


>SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 223 AVLCRCWRSKNWPYCDGAH 279
           A LC C ++   PYCDG H
Sbjct: 26  AFLCGCKQTGTPPYCDGTH 44


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 73  PTVVVGGISYYSYQTIKKAR--ISGSGQINPIIRKDIKKVVDFIDIEDITEKAV 228
           P ++  G SY +Y++I   R  +  SG+   ++   +  + D +DIE +T+ +V
Sbjct: 466 PILICHG-SYTTYRSIPYHRSDVGFSGETCDVLHHSLDLLRDLVDIETVTQSSV 518


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 92  PPTTTVGGTRASQSFTPSRNQPP 24
           PP TT+G   A   F P  N PP
Sbjct: 155 PPQTTMGYPSAQPGFAPPGNYPP 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,161
Number of Sequences: 59808
Number of extensions: 319165
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)