Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M03
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0642 + 5167229-5167310,5168203-5168336,5169627-5169676,517...    28   4.4  
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781...    27   7.7  

>11_01_0642 +
           5167229-5167310,5168203-5168336,5169627-5169676,
           5170786-5170816,5172298-5172489,5172490-5172612,
           5173002-5173172
          Length = 260

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 190 HKKSMYLFTLLGNF--TIHRSRQKNTYINLIFRNVNR*FTKIQTSR 59
           H    Y+  L G F  TI R+R+    ++L FR++   F K+Q SR
Sbjct: 59  HPCVKYILKLAGKFASTIGRARRLQPIVSLGFRSIAFVFGKLQKSR 104


>06_03_0819 -
           24977204-24977290,24977372-24977746,24977823-24978199,
           24978456-24978770,24978861-24979296,24979386-24979463
          Length = 555

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 243 NVR*NRAGVPSRPLCVKTIKNPCIYLLCWVTS 148
           N+R +R G+P  PLC   ++N   Y +  + S
Sbjct: 32  NIRHHRVGIPYHPLCRSALQNIGFYQIAKMRS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,812
Number of Sequences: 37544
Number of extensions: 180069
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)