Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M03
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.69 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 74  FGKLSVNISKN*VYVCIFLSRTMNCEV 154
           FGK  V+ S + ++V    +RT+NCE+
Sbjct: 855 FGKYMVSPSNDALFVLNGETRTINCEI 881


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 184 KSMYLFTLLGNFTIHRSRQKNTYIN-LIFRNVN 89
           K   + + L N TIH +   N Y N  ++ N+N
Sbjct: 299 KEPKIISSLSNKTIHNNNNYNNYNNKKLYYNIN 331


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 399 KTF*YSLNMIKYNNRPNSVTMLIDNT 476
           KTF   L +I+YN  P+S+ ++ D T
Sbjct: 80  KTF---LAVIRYNGVPSSLNVVSDKT 102


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 189 IKNPCIYLLCWVTSQFIVRDR 127
           I   C+YL  WV  ++ +R +
Sbjct: 122 ISEDCLYLNIWVPQKYRLRHK 142


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 189 IKNPCIYLLCWVTSQFIVRDR 127
           I   C+YL  WV  ++ +R +
Sbjct: 122 ISEDCLYLNIWVPQKYRLRHK 142


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 293 DTILNFLLLIHFWFKHITCGKI 228
           D +L  L+++H     +TCG +
Sbjct: 116 DLVLGGLMMVHERQDRLTCGPV 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,886
Number of Sequences: 438
Number of extensions: 2457
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)