Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M02
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              226   7e-60
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.009
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   2.3  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.1  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     28   4.1  
SB_49423| Best HMM Match : Dicty_CAD (HMM E-Value=6.4)                 27   9.4  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  226 bits (553), Expect = 7e-60
 Identities = 100/131 (76%), Positives = 115/131 (87%)
 Frame = +2

Query: 131 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 310
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 311 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 490
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 491 RYVVKRLVPAK 523
           +YV++R +P K
Sbjct: 122 QYVIRRPLPEK 132


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 277 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 107
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 234 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 341
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 317 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 457
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 407 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVK 505
           G    + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_49423| Best HMM Match : Dicty_CAD (HMM E-Value=6.4)
          Length = 384

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 410 EVPRRLGPKRASKIRKLFNLKKED---DVRRYVVKRLVPAK 523
           E+   + P    +IR + N+  ED   DV+  ++K LVPAK
Sbjct: 120 EITASMAPTTGVRIRLVQNILDEDIPDDVKHKLLKPLVPAK 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,312
Number of Sequences: 59808
Number of extensions: 344555
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)