Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_M01
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 27 1.6
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 26 2.2
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 2.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 2.9
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 3.8
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 5.0
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 5.0
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 25 5.0
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 6.6
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 25 6.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.6
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 24 8.7
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 8.7
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 61 QIRWISLKSKQITDIKI--YLAGHTSKYPYPILYDTD 165
Q WIS + T++ YL S+YP+P ++ T+
Sbjct: 339 QSSWISFDGRNRTELLPGDYLTVRISRYPFPTVHSTE 375
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 384 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFVFV-ECITSSF 232
E +F++ I ++F +++I F+ C H V N LF+F IT+SF
Sbjct: 17 EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 356 NGRSRSDFSLKTILDKPSFILSV 288
N R++++ SLK + +PSF+L+V
Sbjct: 16 NTRTKAELSLKQLEKEPSFVLAV 38
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.8 bits (54), Expect = 2.9
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 70 WISLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDT 249
W L K + + HTS + + + D+ S K DD++R +PF T D
Sbjct: 446 WKLLDIKALISYHFAIPVHTSTFVFASS-ERDVSF-SPKTVRDDQKRLFELPFTCTFIDV 503
Query: 250 FDKYEKNV 273
+ K NV
Sbjct: 504 YAKESGNV 511
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 3.8
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -2
Query: 374 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 222
+T P R NG S F+L T PS+ LS + F Y+S + SHP ++ G
Sbjct: 1 MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 163 DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 342
DLKL++ KL K ER ++ +T EKN+ + + ++ + L+ K
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385
Query: 343 L----DLPFRAGAVK 375
L D FRA +K
Sbjct: 386 LISHYDDDFRAKELK 400
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 43 IATFITQIRWISLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYE 216
+ F Q+ +++ S TD++I+ K P +L+D L+ KSSK + + YE
Sbjct: 767 VNVFRNQLLHLNISSVSSTDLEIW------KTPEGVLWDNVLEKKSSKKLDKNTKDYE 818
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 333 FTQNNIGQTKFYFECIHKVDNVLFVFVECITSSFD 229
FT+ G+ + +EC+ D++LFV + I S++D
Sbjct: 12 FTKIATGKVRDLYECVEFPDDLLFVATDRI-SAYD 45
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 150 DRVGI-FRCVSREVNLNVCDLLA-LQAYPSNLCDKSGNXLG 34
D V I FRC S+E +LN C L+ +C ++G+ G
Sbjct: 97 DNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSG 137
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 377 CLTAPARNGRSRSDFSLKTILDKPSFI--LSVSIKSI 273
CLT P +SDFSL+ D ++V+IKSI
Sbjct: 377 CLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSI 413
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.6 bits (51), Expect = 6.6
Identities = 21/96 (21%), Positives = 38/96 (39%)
Frame = +1
Query: 88 KQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEK 267
KQI K+ K +L + + KLK +KL+F E + + + D +K
Sbjct: 835 KQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSEDCDLQKK 894
Query: 268 NVIDFMDTLKIKLGLSNIVLSEKSLLDLPFRAGAVK 375
+++ + N + SE L+ + A K
Sbjct: 895 KLLEVSSKQGSQAPFLNELESEYEKLEADIQEMAQK 930
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -2
Query: 239 PVLTKGIXXXXXXXXXXXLELFSFKSVSYKIG*GYLDVCPA 117
P+LT + L S K V++ + GY +V PA
Sbjct: 306 PILTSDVHSTEEKVLSIIGTLLSRKEVNWTLTAGYFNVYPA 346
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 196 DDKERYERMPFVKTGCDTFDKY-EKNVIDFMD 288
D+K R +P + GC + KY + + +DF D
Sbjct: 34 DEKNRINAVPLLLLGC-LYGKYKDDDFVDFFD 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,504
Number of Sequences: 5004
Number of extensions: 33971
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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