Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M01
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    30   0.91 
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    28   3.7  
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    28   3.7  
04_04_0236 + 23825368-23825763,23826229-23828667                       27   4.9  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    27   6.4  
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114...    27   8.5  
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    27   8.5  

>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +1

Query: 169  KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 324
            +LKS KLH +D+E   ++ PFVK   +      ++V+        L IKL L     N  
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798

Query: 325  LSEKSLLDLPFRAGAVKHVLLT 390
            L +  L+D+  RAG     L+T
Sbjct: 1799 LIKNVLMDIAQRAGNSNGHLVT 1820


>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 345 QKRLFTQNNIGQT-KFYFECIHKVDNVLFVFVECITSSFDKRHTL 214
           +++++ Q+ +  T   Y  C+  +D +  V V C+ +  DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675


>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 118 AGHTSKYPYPILYDTDLKLKSSKLHFDD-KERYERMPFVKTGCDTFDKYEKNVI 276
           AG  S  P  I+   D   +++KLHFDD  +RY     +     TF+K  + ++
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMM 353


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 112 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 273
           Y+   T+   +   +DT +KL+S +  +DD   +++ P V +G   F++   NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 188 YISTTKSATSVCLLSKLDVIHSTNTKRTLSTLW--IHSK*NLVCP 316
           YIS+T   T V  L  LD +H++  K     LW   H   NL+ P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385


>04_03_0623 -
           18109311-18109853,18109900-18110495,18111292-18111493,
           18111616-18111814,18112091-18112191
          Length = 546

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 347 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 231
           S++D S++T+       L V+ +S   FSYL ++ HP+L
Sbjct: 329 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 363


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 347 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 231
           S++D S++T+       L V+ +S   FSYL ++ HP+L
Sbjct: 452 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,597
Number of Sequences: 37544
Number of extensions: 185515
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)