Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M01
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-8|CAI79117.1|  325|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81475-12|CAI79149.1|  325|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    27   4.3  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   4.3  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   4.3  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   4.3  
Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and cap...    26   10.0 

>Z92826-8|CAI79117.1|  325|Caenorhabditis elegans Hypothetical
           protein C18D11.7 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 94  ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 255
           I D K ++A    + P  I Y + +K+     HF   ER E  PF +   DT+D
Sbjct: 39  IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91


>Z81475-12|CAI79149.1|  325|Caenorhabditis elegans Hypothetical
           protein C18D11.7 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 94  ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 255
           I D K ++A    + P  I Y + +K+     HF   ER E  PF +   DT+D
Sbjct: 39  IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 219 YAFCQNWM*YIRQIRKERYRLYGYTQNKTWFVQYCFE*KVASGSSIPRR 365
           YAFC + +  I   R   Y+ Y +  ++  F+ +C    VAS S+IP R
Sbjct: 324 YAFCTSNLIGIAFSRSLHYQFYSWYFHQIPFLLFCDYPHVASVSTIPWR 372


>Z93386-4|CAB07644.1|  370|Caenorhabditis elegans Hypothetical
           protein R11H6.5 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 165 FETKELQTTFRRQRALRAYAFCQNWM*YIRQIRKERYRLYGYTQNKTWFVQYCFE*KVAS 344
           F T+ + T F +  +    AF Q W   +R ++  R R   +     W +QY     +A+
Sbjct: 191 FSTRHI-TWFSQISSELPPAFIQEWQALVRVLKDTRSRYSDFQPLSIWTIQYLAFYCLAN 249

Query: 345 GSSIPRRC 368
           G +  + C
Sbjct: 250 GPNRQKAC 257


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 395 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 273
           D  +  C+   AR    R +F +    D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 112 YLAGHTSKYPYPILYDTDL-KLKSSKLHFDDKERYERMPFVK 234
           Y+A   S  PYP  + TDL +  +S L FD ++R   +  +K
Sbjct: 242 YVAFRESSIPYPAHWPTDLIQFINSMLKFDKEKRLVGLEAIK 283


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/80 (20%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +1

Query: 43  IATFITQIRWISLKSKQIT-DIKIYLA--GHTSKYPYPILYDTDLKLKSSKLHFDDKERY 213
           +A++I ++R++  +++++  D+ +     GH S     ++Y+T+L+     +   DKER 
Sbjct: 81  LASYIEKVRFLEAQNRKMEKDLNLLRGKWGHDST-SVKVMYETELRSAKDLIADSDKERA 139

Query: 214 ERMPFVKTGCDTFDKYEKNV 273
           +    +K   +  + Y   +
Sbjct: 140 QLEDQIKKLVEELNNYRNKL 159


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/80 (20%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +1

Query: 43  IATFITQIRWISLKSKQIT-DIKIYLA--GHTSKYPYPILYDTDLKLKSSKLHFDDKERY 213
           +A++I ++R++  +++++  D+ +     GH S     ++Y+T+L+     +   DKER 
Sbjct: 62  LASYIEKVRFLEAQNRKMEKDLNLLRGKWGHDST-SVKVMYETELRSAKDLIADSDKERA 120

Query: 214 ERMPFVKTGCDTFDKYEKNV 273
           +    +K   +  + Y   +
Sbjct: 121 QLEDQIKKLVEELNNYRNKL 140


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 184 KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 357
           K+  + +E + + P +K   + F   +  + DFM +++ +  LS I    K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657


>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 190 HFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIK 303
           HF D   Y ++   K  CD FD   K++ D  + ++IK
Sbjct: 123 HFQDALHYPKVDDFKIECDEFDL--KSICDDFEGMQIK 158


>U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical
           protein F28A12.3 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 351 KIQKRLFTQNNIGQTKFYFEC 289
           K+ K++FT+ NI   K+Y +C
Sbjct: 36  KLTKKMFTELNISPDKYYGDC 56


>AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 4 protein.
          Length = 756

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 101 SVICLLFRLIHLICVIKVAIX*VYSLVH 18
           +V  +++ L+HLICV    +  V +L+H
Sbjct: 433 AVSTIIYHLLHLICVTGATLYLVQALLH 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,398,446
Number of Sequences: 27780
Number of extensions: 182288
Number of successful extensions: 541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)