Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L24
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   5.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.5  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   9.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   9.9  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   9.9  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/42 (21%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = -3

Query: 445 QMILFMAPTSYYI--IKFYILEANKINLYILVIITTLFSILK 326
           ++++++  + ++   ++FY +E +KI LY+L+   +L+  ++
Sbjct: 94  RIVIYICTSDHWTHSLRFYYIELSKILLYLLICGVSLYGAIR 135


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 464 INDLYKTTKTMNEAVKQLEFGSA 532
           +N+LY   +  NEA + LE+ SA
Sbjct: 346 LNELYDNVENGNEAKRSLEYNSA 368


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 297 MFEKSKNFFITYELFF*VMLN*CQN*NER 211
           + + SKN FITY L F + L   QN N R
Sbjct: 582 LLQNSKNEFITYLLDFYMQLVSSQNKNPR 610


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 86 NIPHEATYPQAIWPHKSM*LH 24
          N P EAT P+  WP K +  H
Sbjct: 9  NSPKEATVPELDWPFKLIKSH 29


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 457  CPEQQMILFMAPTSYYIIKFYILEANKINLYILVIITTLFSI 332
            C E   +   +PT + I  F ++   ++NL  + +IT +FSI
Sbjct: 1212 CIEDIGLFISSPTIFVINIFILMNQERLNL--ISLITWMFSI 1251


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 549 LSISKTAEPNSSCFTASFIVL 487
           L   KT +PN  C T SF++L
Sbjct: 418 LHCEKTCKPNPYCPTCSFVLL 438


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 452 RTEF--INDLYKTTKTMNEAVKQLEFGSAVFEIDRR 553
           +TEF  + D YK+   +N A+      S +FE++++
Sbjct: 79  QTEFEQLRDSYKSHGDLNSAINDSRIQSIIFELNQQ 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,866
Number of Sequences: 5004
Number of extensions: 40722
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)