Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L23
         (536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.10 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   0.98 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   0.98 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   0.98 
AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical pro...    22   3.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   5.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   5.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 316 TRSSQELWLGQLESSGPQHTTSTSYFDAM 402
           T SS +LW G+L+  GP  + +T   + M
Sbjct: 303 TNSSPDLWNGKLKHGGPTPSDATKALEKM 331


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 83  FPWSLIK*NGKHGV*KNRRICPYRSRESL*DASSQFHFNITVTRK 217
           +PW  +K +G      N+R     +R    +   +FHFN  +TR+
Sbjct: 169 YPW--MKAHGDSSATGNKRTRQTYTRYQTLELEKEFHFNKYLTRR 211


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 83  FPWSLIK*NGKHGV*KNRRICPYRSRESL*DASSQFHFNITVTRK 217
           +PW  +K +G      N+R     +R    +   +FHFN  +TR+
Sbjct: 169 YPW--MKAHGDSSATGNKRTRQTYTRYQTLELEKEFHFNKYLTRR 211


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 83  FPWSLIK*NGKHGV*KNRRICPYRSRESL*DASSQFHFNITVTRK 217
           +PW  +K +G      N+R     +R    +   +FHFN  +TR+
Sbjct: 169 YPW--MKAHGDSSATGNKRTRQTYTRYQTLELEKEFHFNKYLTRR 211


>AM712902-1|CAN84641.1|   95|Tribolium castaneum hypothetical
           protein protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 270 ETLHVGCDSKHLLSH 226
           + L +GCD KH+  H
Sbjct: 30  QPLVIGCDEKHVSPH 44


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 108 TENTASKKTEESAHTGAENRYKMPAANFTSISQLPGNTDCGIKD 239
           T  T+  +   S  + + N    P A     +Q PG++   +KD
Sbjct: 150 TPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKD 193


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 108 TENTASKKTEESAHTGAENRYKMPAANFTSISQLPGNTDCGIKD 239
           T  T+  +   S  + + N    P A     +Q PG++   +KD
Sbjct: 170 TPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKD 213


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 315 DTEFPGVVARPIGEFRSTAHYQYQLL 392
           D  FPG  ++P  +     H+Q  LL
Sbjct: 117 DLYFPGATSQPPTDNSHVHHHQTSLL 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,965
Number of Sequences: 336
Number of extensions: 3207
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)