Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L23
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...   134   1e-32
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    39   5e-04
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   0.77 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   1.3  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   1.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.2  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   7.2  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.2  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   9.5  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score =  134 bits (323), Expect = 1e-32
 Identities = 59/102 (57%), Positives = 75/102 (73%)
 Frame = +3

Query: 231 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTAHYQYQLLRCNVDL 410
           I+DVW+ NL +E  +I  ++++Y  V+MDTEFPGVVARP+G F+S+  Y YQ LR NVD 
Sbjct: 22  IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 81

Query: 411 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSI 536
           L+IIQ+GL   DE G  P    TWQFNF FNLQ+DMYA +SI
Sbjct: 82  LKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESI 123


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +3

Query: 237 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTAHYQYQLLRCNVDLLR 416
           ++   N  E  + + + V   H+V++D EF G++       ++T   +Y+LLR +     
Sbjct: 2   EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61

Query: 417 IIQLGLTF--MDENGKT 461
           I+Q+G+TF  +  NGK+
Sbjct: 62  ILQIGITFIYLQNNGKS 78


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 302 LGCNGHGVPRSCGSANWRVQVHSTLPVPATSMQCRPFADYPVGFNIYG*KWQNSTRLYHM 481
           L C G  +     +A + V + ST+ +P +S+   PF D  +  +  G KW  ST + ++
Sbjct: 219 LCCLGSAIFAKASNALFVVIILSTISIPISSIFVHPFKDPSLLVHFTGLKW--STLMKNL 276

Query: 482 A 484
           A
Sbjct: 277 A 277


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 341 SANWRVQVHSTLPVP-ATSMQCRPFADYPVGFNIYG 445
           S+N R+    T+ +P +TS    PF   P GFN +G
Sbjct: 287 SSNDRLNAAGTVDIPNSTSTSASPFEMDPEGFNNFG 322


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 328 QELWLGQLESSGPQHTTSTSYFDAM*TFCGLSSWV*HLWMKMAKLHQVIPHGNSISSLIY 507
           Q+LWL  L     QH T +S       F G S+ + +L +  A+    + HG+ +  + Y
Sbjct: 227 QDLWL--LSGFALQHRTLSSTKGWFNGFAGSSATLTYLDIVPARTWNHLCHGHLVMCMGY 284

Query: 508 RKICML 525
           R+  ML
Sbjct: 285 RRHAML 290


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 246 NHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 344
           +H+L +E   +R + ++ + +  D +F GVV R
Sbjct: 450 DHSLRDELISLRSLAEQKNTIEFDAKFLGVVER 482


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 91  EFDKIKRKTRRLKKPKNLPIPEQRIVIRCQQPISLQ 198
           E+++ +RK +R    K+LP+P     +  ++  SL+
Sbjct: 83  EYNRARRKAKRHYLDKHLPVPPDLAKVSLKETSSLE 118


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 341 SHNSWELRVHCNPVIFLHHLSNYLKLFM*VVIPNIFYP 228
           +++SW   V     + L  L+  + LF+ V+IP +F+P
Sbjct: 140 TYSSWSFSVKGGSFLLLLPLAYNITLFLLVIIP-LFFP 176


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -3

Query: 219 YFLVTVILK*NWLLASYNDSLLRYGQILRFF*TPCFPFYFIKLQGNECQ 73
           Y   ++ L+ +W+         R  Q+   F      FY I+L G +C+
Sbjct: 710 YLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAILIRFYHIRLYGKKCK 758


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 150 TGAENRYKMPAANFTSISQLPGNTDCGIKDVWNHNLHEEFQIIRQ 284
           TG   +  + A +++S  QL   +D G   VWN +LH     +R+
Sbjct: 433 TGGHTK-DVTAVDWSSEGQLASISDDGSVRVWNSSLHGSAANLRE 476


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 341 SHNSWELRVHCNPVIFLHHLSNYLKLFM*VVIPN 240
           +H+ WE R +   V +LH+ + YL+  +   +PN
Sbjct: 238 NHSRWERRYYARQVTYLHN-NGYLRKCL-TFVPN 269


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  FDLEALALISLEFDKIKRKTRRLKKPKNLPIPEQRIV 168
           F  E L L+   FDK++ +   +K  + L  P+Q+ V
Sbjct: 293 FRNEGLTLLDDRFDKVEEEYTPIKDERELIDPDQKDV 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,659
Number of Sequences: 5004
Number of extensions: 53146
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)