Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L22
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AL110500-4|CAB54484.1|  215|Caenorhabditis elegans Hypothetical ...    27   6.1  
AB112930-1|BAD07035.1|  215|Caenorhabditis elegans Rab27 protein.      27   6.1  

>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 112 VSFIIFLCY*FNDFCLNNILFNFRYIIMKN 201
           V FI FLC      C N ++ NF +I MKN
Sbjct: 12  VVFIGFLC--LVSVCSNYVVMNFTFICMKN 39


>AL110500-4|CAB54484.1|  215|Caenorhabditis elegans Hypothetical
           protein Y87G2A.4 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 412 FIIITLLTNYCNFMGLRDYLLKLN*KVHG*C 504
           FI+I  +TN  +F+ +RD+L +L  KVH  C
Sbjct: 92  FILIFDITNEQSFLNIRDWLSQL--KVHAYC 120


>AB112930-1|BAD07035.1|  215|Caenorhabditis elegans Rab27 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 412 FIIITLLTNYCNFMGLRDYLLKLN*KVHG*C 504
           FI+I  +TN  +F+ +RD+L +L  KVH  C
Sbjct: 92  FILIFDITNEQSFLNIRDWLSQL--KVHAYC 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,892,131
Number of Sequences: 27780
Number of extensions: 113732
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)