Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_L21
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 27 1.5
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 27 1.5
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 1.9
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 5.9
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 5.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.7
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 7.7
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 7.7
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 25 7.7
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 7.7
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 7 RRKLKMESLFAIPFTVLEIPNIKIKKPTW 93
+ K K+E ++P L++ ++ KKPTW
Sbjct: 75 KTKRKIEEQSSVPVEELDLVTLRPKKPTW 103
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 3 HEEKTKNGIFICYSFHSS*NTKYKNKKANMVTGSFCNXQTFALVLLSYFLVTGGIIYD 176
HE N + Y F +KY + N+ + +F +L+ SY +V GG+ D
Sbjct: 279 HETDDMNKV---YGFEGECRSKYNERTFNIFSETFSLLPLGSLISDSYLVVHGGLFSD 333
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 1.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 354 STPKLNRILLISVAFLCILVSFFTTWI 434
S P + +L + ++ L ++V FFT W+
Sbjct: 79 SHPNIYSLLRLLISVLAVIVVFFTAWV 105
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 9 EKTKNGIFICYSFHSS*NTK 68
EK N + IC FH S NTK
Sbjct: 95 EKVFNAVDICVKFHLSINTK 114
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 225 HSRPVAFMPNRVNGQYIMEGLAS 293
HS PV F+P Y+ +G AS
Sbjct: 20 HSEPVNFVPKENAKSYVRQGFAS 42
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 7.7
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -2
Query: 253 FGINATGLLWPCSSVVDPTLGGSTITS*MIPPVTKKYDS---KTSAN-VXSLQKEPVTML 86
FGI++ L+W S V + +G I M P + +TSAN SL+ E T+
Sbjct: 3794 FGIDSIDLIWLASKVSEAGIGKLDIGLLMEKPTFYRILQLLCETSANHSTSLKHEFGTLN 3853
Query: 85 AFLFLYLVFQE 53
L YL Q+
Sbjct: 3854 TLLSKYLTDQD 3864
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 387 SVAFLCILVSFFTTWIFMRMKLPGYLQN*F 476
S+ F IL+ T + KLPGYL+N F
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLF 320
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 108 CNXQTFALVLLSYFLVTGGIIYDV-IVEP 191
C + +VLLS F T +++DV ++ P
Sbjct: 458 CQRDRYGMVLLSEFTATSAMLHDVPLINP 486
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 171 YDVIVEPPSVGSTTDEHGHSRPVAFMPNRVNG 266
Y V+V P+ S E +PV F+ NR+NG
Sbjct: 144 YGVVVHYPNSESLI-ERFVEKPVEFVSNRING 174
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 34 FAIPFTVLEIPNIKIKKPTWLQAPSAMXKHLHWFYYHTF 150
F P + + K+ KP W+ K L W Y TF
Sbjct: 110 FLTPSKARQWKHQKVVKPEWIVDCIKQKKILPWINYRTF 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,997
Number of Sequences: 5004
Number of extensions: 52952
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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