Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L21
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                        120   8e-28
03_04_0162 + 17858802-17861168                                         30   1.5  
11_01_0359 - 2731522-2732346                                           29   2.6  
12_01_0727 + 6446283-6449300                                           28   6.0  
09_06_0216 + 21627238-21627834                                         28   6.0  
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454     27   7.9  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score =  120 bits (289), Expect = 8e-28
 Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
 Frame = +3

Query: 123 FALVLLSYFLVTGGIIYDVIVEPPSVGSTTDEH-GHSRPVAFMPNRVNGQYIMEGLASSF 299
           FAL+LL+YF V  G++YDVIVEPP +GS  D   G  RPV F+P RVNGQYI+EGL+S  
Sbjct: 62  FALILLTYFAVVSGLVYDVIVEPPGIGSVQDPATGAVRPVVFLPGRVNGQYIIEGLSSGI 121

Query: 300 LFSLGGIGFIILDRTHNPSTPKLNRILLISVAFLCILVSFFTTWIFMRMKLPGYL 464
           +F +GGIG I+LD   + + P+  R+         I++++    +F+R+K+PGYL
Sbjct: 122 MFVIGGIGIILLDLAVDRNRPRSLRVSFGGSGVAAIVIAYAMAMLFLRIKIPGYL 176


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 171 YDVIVEPPSVGSTTDEHGHSR-PVAFMP 251
           Y V+V+PP  G+ TD+ GH R   +F+P
Sbjct: 56  YIVLVDPPPHGAATDDDGHRRWHESFLP 83


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 345 HNPSTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 461
           H P    L R+L L+  AFL +  + F  W+ +R ++P +
Sbjct: 79  HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 163  PPVTKKYDSKTSANVXS--LQKEPVTMLAFLFLYLVF 59
            PP++K+    T  N+ +   +KEP+ +L FLF  L F
Sbjct: 948  PPLSKQCSYPTEPNIMTHASEKEPIDVLLFLFAGLGF 984


>09_06_0216 + 21627238-21627834
          Length = 198

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 315 GIGFIILDRTHNPSTPKLNRILLISVAFLCILVSFFTTWIFMRMK 449
           G+GF ++D    PS+    RI+L+  A +  L+  +  W   R +
Sbjct: 69  GVGFPLVDFLVLPSSENAGRIMLLVWALIGALIMAYYAWSHYRKR 113


>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
          Length = 249

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 340 RSRIIKPIPPSEKRKLEARPSIIY*PLTRFGINATGLLWPC 218
           R R  KP+PP + + L  R +++Y P T   I    L  PC
Sbjct: 97  RDRAGKPLPPPQPQSLFVRSALLYYPHTP-SIFVADLPLPC 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,221
Number of Sequences: 37544
Number of extensions: 303804
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)