Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L21
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   3.1  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   3.1  
Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical...    28   5.4  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    27   9.4  

>Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical
           protein ZK858.3 protein.
          Length = 225

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 120 TFALVLLSYFLVTGGIIYDVIVEPPSVGSTTDEHGHSR 233
           T+ L+++   ++ GG++ D   E P +  ++DE  H R
Sbjct: 4   TYILIIVPLIIIGGGVVADNTNETPVLAHSSDEQPHQR 41


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -1

Query: 380  KDPIQFWCRWVVSAIQNYKTNXXXXXXKAG---SETFHYILTVNTIR-HKCYRSTMAMFI 213
            +DP Q W  WV +    Y  N            SE  H+  TV++++   CY   ++  +
Sbjct: 1445 QDPSQVWVGWVTTQYHYYNVNFDGSQGVRKCRFSEADHHGTTVDSVQSQNCYMVNVSELL 1504

Query: 212  GRRPN 198
               P+
Sbjct: 1505 ATTPD 1509


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -1

Query: 380  KDPIQFWCRWVVSAIQNYKTNXXXXXXKAG---SETFHYILTVNTIR-HKCYRSTMAMFI 213
            +DP Q W  WV +    Y  N            SE  H+  TV++++   CY   ++  +
Sbjct: 1566 QDPSQVWVGWVTTQYHYYNVNFDGSQGVRKCRFSEADHHGTTVDSVQSQNCYMVNVSELL 1625

Query: 212  GRRPN 198
               P+
Sbjct: 1626 ATTPD 1630


>Z50741-6|CAA90613.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 310 SEKRKLEARPSIIY*PLTRFGINATGLLWPCSSVVDPT 197
           S K   E  PS+    L   G++   L  PC S  DPT
Sbjct: 159 SSKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFEDPT 196


>AL032630-15|CAA21571.3|  331|Caenorhabditis elegans Hypothetical
           protein Y62H9A.14 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 310 SEKRKLEARPSIIY*PLTRFGINATGLLWPCSSVVDPT 197
           S K   E  PS+    L   G++   L  PC S  DPT
Sbjct: 159 SSKENYEKNPSLYQYDLLSTGLDKKNLRKPCDSFEDPT 196


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
            protein 12 protein.
          Length = 1280

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 217  SSVVDPTLGGSTITS*MIPPVTKKYDSKTSANVXSLQKEPVTMLAFL-FLYLVFQEL 50
            SSV +  L G  +     PPVT  +         S +  P+ ++ FL  LY +F  +
Sbjct: 1006 SSVAEQLLAGQDVIPEAFPPVTIYFSDIVGFTTISGESTPMEVVTFLNKLYTLFDSI 1062


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,083
Number of Sequences: 27780
Number of extensions: 291637
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)