Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L20
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094...    28   5.6  
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665...    27   7.5  
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180...    27   9.9  
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    27   9.9  

>01_06_0725 +
           31508156-31508277,31508950-31509118,31509311-31509406,
           31510037-31510097,31510387-31510451,31511104-31511178,
           31511276-31511351,31512140-31512303,31512398-31512421
          Length = 283

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 165 HYICGGTIPAAFICWPILDRIIHRNVFPI*TYGLVGVLF 281
           +Y  G +IP+ F+ W + D I HR      T   V +LF
Sbjct: 218 YYFIGSSIPSGFVLWVMKD-IPHRQTVERPTQSRVVILF 255


>02_02_0088 -
           6655493-6655601,6656057-6656259,6656382-6656594,
           6656683-6656792,6656878-6656981,6657076-6657245,
           6657337-6657501,6657584-6657702,6657853-6657940,
           6658035-6658140,6658235-6658323,6658461-6658604,
           6658715-6658807,6658906-6658972,6659116-6659228,
           6659306-6659401,6659524-6659724
          Length = 729

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 301 SYQLDKLFSGCHYIFSHEYYVIREWLLPG 387
           +Y  DK  S C  +    Y+V R WL PG
Sbjct: 677 TYHEDKCRSNCGDLSQRWYHVPRSWLKPG 705


>05_04_0203 +
           19016547-19016860,19017020-19017169,19017946-19018081,
           19018222-19018323,19018556-19018675,19018800-19018880,
           19019041-19019381,19020296-19020589,19020701-19021025,
           19021167-19021400,19021506-19021760
          Length = 783

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 150 SCWS*HYICGGTIPAAFICWPILDRII 230
           S W  HY+C G    AFI +P+ D ++
Sbjct: 678 SIWF-HYVCKGRFEPAFIKFPLQDAMV 703


>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 354 VLCD*GVAVA-RMANGCAVICYISIDAVAGGSGHFGLCYYPLASTY 488
           + C  GV +A   AN CA+     +D  AG   H  + + P  S+Y
Sbjct: 438 ICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCPSCSSY 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,791
Number of Sequences: 37544
Number of extensions: 303771
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)