Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_L19
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 34 0.011
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 29 0.42
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 28 0.73
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 0.97
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 0.97
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 27 1.7
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 2.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 3.0
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 3.9
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 5.2
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 5.2
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 6.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 6.8
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 24 9.0
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 24 9.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 9.0
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 33.9 bits (74), Expect = 0.011
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 117 MAPSSDWDEIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLDV 263
+ P + W +++ LA L+STS RL +C ++V+ ++ + L +
Sbjct: 1194 LTPRNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNILSNECLPI 1242
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 28.7 bits (61), Expect = 0.42
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 177 QLSSTSQRLSE-RNCIEIVTKLIE-QKLLDVIFT-TDGKEYLTSQQLIREIKDELFVHGG 347
+L T R S+ + I ++ +L E +L D T D K+Y + LIR + DEL
Sbjct: 157 ELQQTLARSSQYKKVISVLKELNEANQLFDNFHTLVDSKQYYHASDLIRRVWDEL--SRS 214
Query: 348 RINTVDVAKEFHVDLNQINNHVSEIV 425
+ + V ++F + + +H+ +I+
Sbjct: 215 DFDGILVVEQFKSRMTGLLSHLEDIL 240
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.9 bits (59), Expect = 0.73
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 183 SSTSQRLSERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQLIREIKD---ELFVHGGRI 353
SS+ ++L C++IV L + + +D D Y L+RE+ D ++++ +I
Sbjct: 493 SSSEKQLRTSRCLKIVRLLKQFRHMDESVPFDDLIYKLQNILVRELTDFTTGIYINESKI 552
Query: 354 NTVDVA 371
N +DVA
Sbjct: 553 N-LDVA 557
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 0.97
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Frame = +3
Query: 240 IEQKLLDVIFTTDGKEYLTS----QQLIRE--IKDELFVHGGRINTV---DVAKEFHVDL 392
I+Q +DV T+G +YL S QL+ +K + V R+ V D + H DL
Sbjct: 102 IQQSDVDVCIITNGSKYLNSTCQLAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDL 161
Query: 393 NQINNHVSEI 422
N INN V++I
Sbjct: 162 N-INNDVAKI 170
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.5 bits (58), Expect = 0.97
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = +3
Query: 93 NSQTI*NAMAPSS-DWDE---IKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLD 260
N+Q AMA S D DE ++ D A + +RL ER + L +Q LLD
Sbjct: 222 NAQFAKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRLEERAANAVKKLLPKQFLLD 281
Query: 261 VIFTTDGKEYLTSQQLIREIKDELFVHGGRINTVDVAKEFHVDL 392
+ T +GK ++L E + +V + D A H L
Sbjct: 282 LEETKNGKSGNRKRKLELEFGLKGYVPSDDLLYADGANSVHNQL 325
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 267 FTTDGKEYLTSQQLIREIKDELFVHGGRINTVDVAKEFHVDLNQINNHVSEIVKGIEV 440
++ +GK L QLI + E F H R + D+ ++FH DL +N + +K +E+
Sbjct: 478 YSPEGK--LLKLQLIIKWGGE-FTHSARYQSKDLGEQFHKDLYIMNR---DCLKDVEI 529
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 138 DEIKRLAADFQKAQLS--STSQRLS-ERNCIEIVTKLIEQKLLDVI 266
DE + DF+ L+ S+S L+ E+NCIE K +E + L +I
Sbjct: 301 DETRYGMGDFEARHLALDSSSAALAVEKNCIEGSLKYLENQFLSLI 346
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 3.0
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 216 CIEIVTKLIEQKLLDVIFTTDGKEYLTSQQLIREIKDELFVHGGRINTVDVAKEFHVDLN 395
C + V KLI++ +IF KE + S + +R E F H G + +D ++ L
Sbjct: 513 CFDKVLKLIQEGHQVMIFVHSRKETINSAKKLR----EQFFHEGEADLLDNSQHEKYSLA 568
Query: 396 Q 398
Q
Sbjct: 569 Q 569
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 3.9
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +3
Query: 111 NAMAPSSDWDEIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLDVIFTTDGKEY 290
N A S + DE+ L A ++ + R N I + + + + T + +E
Sbjct: 291 NEQAASMEEDEVDPLDAYMASLVGTTDTIRPGLLNTEVIDPNANDDERMVISETLEEEEN 350
Query: 291 LTSQQLIR-EIKDELFVHGGRINTVDVAKEFHVDLNQINN 407
L + R + KD + V +IN D K+F+V+ ++ N
Sbjct: 351 LLALAAKRSKKKDVITVDHSKINYEDFKKDFYVEPEELKN 390
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 132 DWDEIKRLAADFQKAQLSSTSQRL 203
D DEI AADF++ LSS + L
Sbjct: 1418 DLDEIPSTAADFERQLLSSPNSSL 1441
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 292 KYSLPSVVNITSS--NFCSINFVTISIQFLSDNLWEVE 185
KYSL S + NFC VT I F +WE++
Sbjct: 679 KYSLESGNSSLKPIYNFCETGKVTPQIYFAPQEVWEIK 716
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 317 FPDKLLRS*IFFTISSKYNIKQFLFN 240
+P +L IF IS KY ++QF+++
Sbjct: 485 YPTFILLPIIFSMISLKYRLRQFIYS 510
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 6.8
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3
Query: 255 LDVIFTTDGKEYLTSQQLIREIKDELFV---H-GGRINTVDVAKEFHVDLNQINNHVSEI 422
+D++ T+GK L +LI+ + H GG +N + +H+ + NN V +
Sbjct: 327 VDLLGPTNGKYALADVELIKSSDGSTHLTRTHLGGILNAGNTVLAYHLAVTNFNNEVYDT 386
Query: 423 VK 428
++
Sbjct: 387 LR 388
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 437 LYSFYNFRHMIVNLVEINMKLFSNINSV 354
L + N H I N N++L SNINS+
Sbjct: 35 LLTLDNLVHHIHNGTTSNLRLISNINSI 62
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 240 IEQKLLDVIFTTDGKEYL 293
IE L DV+FT+DG E L
Sbjct: 348 IEGVLSDVLFTSDGSEML 365
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 309 IREIKDELFVHGGRINTVDVAK 374
I + DEL VH G N +D+ K
Sbjct: 8 IEDSADELSVHSGNDNEIDLEK 29
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 117 MAPSSDWDEIKRLAADFQKAQLSSTSQRLSERNCIE 224
+ PS++ +E KR A + + STSQ S R E
Sbjct: 214 LTPSNENEESKRSAPEIALKEKESTSQDESNREAEE 249
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 207 ERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQ 302
E+ CI V + ++Q +++ T+ +EY+ Q
Sbjct: 427 EQLCINYVNEKLQQIFIELTLKTEQEEYVREQ 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,205
Number of Sequences: 5004
Number of extensions: 28970
Number of successful extensions: 88
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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