Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L19
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89...    65   2e-11
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702...    32   0.23 
04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949...    31   0.31 
12_01_0467 + 3657320-3657992,3658077-3658342                           28   3.8  
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    27   6.7  
04_03_0476 - 16363811-16364101,16364515-16364763,16365008-163651...    27   8.8  

>05_01_0133 +
           895107-895280,895960-896271,896815-897081,897161-897265
          Length = 285

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +3

Query: 141 EIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLD--VIFTTDGKEYLTSQQLIR 314
           E+  L    + AQ + +S RLSERN +E+V KL E+ ++D  ++ TT GKEY+TS  L  
Sbjct: 4   ELLELQRQLEAAQSARSSVRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKH 63

Query: 315 EIKDELFVHGGRINTVDVAKEFHVDLNQINNHVSEIV 425
           EIK E+    GR + VD++    VDL  +     ++V
Sbjct: 64  EIKMEI-KKRGRASLVDLSDILGVDLYHVERQSQKVV 99


>10_08_0961 +
           21869612-21869773,21869869-21869956,21870047-21870277,
           21870371-21870538,21870808-21871001,21871151-21871234,
           21871315-21871434,21871621-21871714,21871813-21871973,
           21873237-21873313,21873738-21873932,21874487-21874559,
           21874635-21874721,21874906-21875043,21875181-21875383,
           21875469-21875631,21875861-21875992
          Length = 789

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
 Frame = +3

Query: 87  HINSQTI*NAMAPSSDWDEIKRLAADFQKAQLSSTSQRLS-ERNCIEIVTKLIEQKLLDV 263
           H+NS    + +  +S  +++K   A   K+   +    +S ER  +E+     E K L  
Sbjct: 606 HVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRS 665

Query: 264 IFTTDGKEYLTSQQLIREIKDELFVHGGRINTVDVAKEFHVDLNQINNHVSE 419
              +  KEY  +Q+ I E+K EL     R   + + +E+    N+++   SE
Sbjct: 666 ATGSAEKEYEINQKKIAELKMEL--ERERNERIKLEEEYEEVKNEVSELTSE 715


>04_03_0477 -
           16393764-16394054,16394424-16394672,16394849-16394989,
           16395654-16395795,16396287-16396665,16397178-16397436,
           16398232-16398288
          Length = 505

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 186 STSQ-RLSERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQLIREIKDELFV 338
           ST+Q RL  R  + +V +++   +   +F  D K+  T   L+REI + LFV
Sbjct: 449 STNQTRLEHRTLLPMVQRIVNFTVSMALFYDDKKDAYTFGTLLREIVESLFV 500


>12_01_0467 + 3657320-3657992,3658077-3658342
          Length = 312

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 330 LFVHGGRINTVDVAKEFHVDLNQI 401
           L++ GG++ T +  K FHV LN+I
Sbjct: 84  LYLDGGKLGTTEGFKPFHVYLNRI 107


>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 198 RLSERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQL 308
           R+S+ N   +V + +  + LD+   ++GKE + S+ L
Sbjct: 421 RISDENLFALVCQCVSLRELDIGMFSEGKERIRSESL 457


>04_03_0476 -
           16363811-16364101,16364515-16364763,16365008-16365143,
           16365552-16365770,16366210-16366588,16366909-16367089
          Length = 484

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 186 STSQ-RLSERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQLIREIKDELFV 338
           +T+Q RL     + +V +++   +  V+F  D  +  T   L+REI + LFV
Sbjct: 428 TTNQTRLEHGTLLPMVQRVVNFTVSMVLFYDDRNDAYTFATLLREIIESLFV 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,909
Number of Sequences: 37544
Number of extensions: 145412
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)